Miyakogusa Predicted Gene

Lj3g3v1957990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1957990.1 Non Characterized Hit- tr|I1JZC3|I1JZC3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48587 PE,84.45,0,ATPase
domain of HSP90 chaperone/DNA topoisomerase II/histidine
kinase,ATPase-like, ATP-binding doma,CUFF.43439.1
         (728 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005810.1 | DNA mismatch repair protein MLH1, putative | H...  1300   0.0  
Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | H...   142   1e-33
Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal ...   100   8e-21

>Medtr3g005810.1 | DNA mismatch repair protein MLH1, putative | HC |
           chr3:403887-391690 | 20130731
          Length = 719

 Score = 1300 bits (3364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/716 (86%), Positives = 665/716 (92%), Gaps = 1/716 (0%)

Query: 14  PPKIQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSDD 73
           PPKIQRL+ESVVNRIAAGEVIQRPVSAVKEL+ENSLDA STSINL IKDGGLKLIQVSDD
Sbjct: 4   PPKIQRLAESVVNRIAAGEVIQRPVSAVKELVENSLDAASTSINLTIKDGGLKLIQVSDD 63

Query: 74  GHGVRFEDLPILCERHTTSKLSAFEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGKLH 133
           GHG+R EDLPILCERHTTSKLSAFEDLQ I SMGFRGEALASMTYV HVTVTTITKG+LH
Sbjct: 64  GHGIRREDLPILCERHTTSKLSAFEDLQRITSMGFRGEALASMTYVAHVTVTTITKGQLH 123

Query: 134 GYRVSYRDGVMEHEPKPCAAVKGTQIMVENLFYNMAARRKTLQSSSDDYSKIVDLVSRFA 193
           GYRVSYRDGVME EP+PCAAVKGTQIMVENLFYNMAAR+KTLQ+SSDDYSKIVD+VSRFA
Sbjct: 124 GYRVSYRDGVMEQEPRPCAAVKGTQIMVENLFYNMAARKKTLQNSSDDYSKIVDVVSRFA 183

Query: 194 IHHTNVGFSCRKHGAVKADVHTVSTSSRLDAIRSVYGVSVARNLVEIEASDNDPSTSCFE 253
           IHHTNV FSCRKHGAVKADVHTV+TSSRLDAIR+VYGVS A NL+E++ASDNDPS+S FE
Sbjct: 184 IHHTNVSFSCRKHGAVKADVHTVATSSRLDAIRTVYGVSAAHNLIEVQASDNDPSSSIFE 243

Query: 254 MHGYISNANHAAKKITMVLFINDRLVEWSALKRAVEIVYAATLPKASKPFIYISIVLPPE 313
           MHGY+SNAN+AAKKITMVLFINDRLVEWSALKRA+EIVYAAT PKASKPFIYISIVLPPE
Sbjct: 244 MHGYVSNANYAAKKITMVLFINDRLVEWSALKRAIEIVYAATFPKASKPFIYISIVLPPE 303

Query: 314 NIDVNVHPTKREVSVLNQEVIIEKIQSVVESTMRSSNEARTFQEQTAGQSSLSLINASKE 373
           NIDVNVHPTKREVS+LNQEV+IEKIQ V+EST+R+SN+ARTFQEQTAGQ S S  N SKE
Sbjct: 304 NIDVNVHPTKREVSLLNQEVVIEKIQLVIESTLRNSNDARTFQEQTAGQFSTSRTNKSKE 363

Query: 374 VKHSPTPTGSRSQKVPVHKLVRTDSLDPAGRLHAYMQTMPDSNLEKNINLNAVRSSVRQR 433
           V  SPTP GSRSQKVPV+KLVRTDSLDPAGRLHAYMQ +P  + EK++ LNAVRSSVRQR
Sbjct: 364 VNLSPTPPGSRSQKVPVNKLVRTDSLDPAGRLHAYMQVIPGGHQEKSVTLNAVRSSVRQR 423

Query: 434 RNPKDSTKLTSLDQLRDEINSNCDPGMMDIVRHCTYVGMADDIFALLQHNTHLYLANVVN 493
           R+ +DS +LTS+++L  EIN+N DPGMMDIV+HCTYVGMADD+FALLQH THLYLANVVN
Sbjct: 424 RSLQDSIELTSVEELLVEINNNYDPGMMDIVKHCTYVGMADDVFALLQHKTHLYLANVVN 483

Query: 494 LSKELMYQQVLSRFAHFNAIQLSDPVPLKDLIILALKEEDLDSECNDDDEFKEKIAEMNT 553
           LSKELMYQQVLSRF HFNAIQLSDP P+KDLIILALKEEDLDSECNDDD FKEKIA+MNT
Sbjct: 484 LSKELMYQQVLSRFGHFNAIQLSDPAPVKDLIILALKEEDLDSECNDDDTFKEKIADMNT 543

Query: 554 ELLKQKVEMLEEYFGIHIDEHGNISRLPVILDQYTPDMDRIPEFALSLGNDVDWEDEKNC 613
           +LLK K  MLEEYFGIHID+ GNISRLPVILDQYTPDMDRIPEF LSLGNDVDW+DE+NC
Sbjct: 544 DLLKTKAGMLEEYFGIHIDDQGNISRLPVILDQYTPDMDRIPEFVLSLGNDVDWDDERNC 603

Query: 614 IQAVSAALGNFYAMHPPMLPNPSGEGLSFYKKRKLIDSCAEENTCDITGNDV-DDQVEHE 672
           IQ VSAALGNFYAMHPPMLPNPSGEGL FYKKRKL DSCA ENTCD TG+DV D  +E E
Sbjct: 604 IQTVSAALGNFYAMHPPMLPNPSGEGLLFYKKRKLFDSCAMENTCDNTGSDVIDSNIEQE 663

Query: 673 LLSEAETAWAQREWSIQHVLFPSMRLFFKPPVSMASNGTIVQVASLDKLYKIFERC 728
           LLSEAETAWAQREWSIQHVLFPSMRLFFKPP SMA+NGT V+VASL+KLYKIFERC
Sbjct: 664 LLSEAETAWAQREWSIQHVLFPSMRLFFKPPPSMATNGTFVKVASLEKLYKIFERC 719


>Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | HC |
           chr1:39690274-39683612 | 20130731
          Length = 933

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 182/358 (50%), Gaps = 22/358 (6%)

Query: 12  MEPPKIQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVS 71
           +E   I+ +++ +V+RI +G+VI    SAVKEL+ENSLDAG+TSI + +KD G +  QV 
Sbjct: 3   IESQIIKPIAKGIVHRICSGQVILDLSSAVKELVENSLDAGATSIEISLKDFGEEWFQVI 62

Query: 72  DDGHGVRFEDLPILCERHTTSKLSAFEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGK 131
           D+G G+      +L  +H TSKLS F DLQS+ + GFRGEAL+S+  +G++T+ T T  +
Sbjct: 63  DNGCGISPNSFKVLGLKHHTSKLSEFHDLQSLTTFGFRGEALSSLCALGNLTIETRTVNE 122

Query: 132 LHGYRVSY-RDGVMEHEPKPCAAVKGTQIMVENLFYNMAARRKTLQSS-SDDYSKIVDLV 189
                +++   GV+  E K    + GT + V+ LF ++  R K  + +   +Y K+  L+
Sbjct: 123 PVATHLTFNHSGVLVAEKKIARQI-GTTVTVKKLFSSLPVRSKEFKRNIRKEYGKLASLL 181

Query: 190 SRFAIHHTNVGFSCRKHGA--VKADV-HTVSTSSRLDAIRSVYGVSVARNLVEIEASDND 246
           + +A+    V F C       VK+ V  T    S  D I +V G++    L        +
Sbjct: 182 NAYALIAKGVRFGCTNTTGKNVKSVVLKTQGNDSLKDNIITVLGMNTFNCL--------E 233

Query: 247 PSTSCF----EMHGYISN---ANHAAKKITMVLFINDRLVEWSALKRAVEIVYAATLPKA 299
           P + C     ++ G++S     N          F+N R V+   + + V  +Y +   K 
Sbjct: 234 PMSLCISESCKVDGFLSKPGLGNGRNLGDRQYFFVNGRPVDMPKIGKLVNELYRSANSK- 292

Query: 300 SKPFIYISIVLPPENIDVNVHPTKREVSVLNQEVIIEKIQSVVESTMRSSNEARTFQE 357
             P   ++  +P +  DVNV P KR++    +  +++ ++  ++      N +    E
Sbjct: 293 QYPIAIMNFTVPTKAYDVNVTPDKRKIFFSEETSLLQALREGLQQIYSPDNASYAVNE 350


>Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal
           domain protein | HC | chr5:9761916-9752005 | 20130731
          Length = 1232

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 133/276 (48%), Gaps = 28/276 (10%)

Query: 17  IQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSDDGHG 76
           ++ L ESV + I +   +      V+EL+ NSLDA +T +++ + D G   ++V DDG G
Sbjct: 4   VRPLPESVRSSIRSAFSLFDFTRIVEELVYNSLDARATKVSVFV-DIGSCYLKVVDDGGG 62

Query: 77  VRFEDLPILCERHTTSKLSAFEDLQSI-KSMGFRGEALASMTYVGHVTVTTITKGKLHGY 135
           +  + L ++ ER+ TSK     DL +  ++ GFRGEALAS++ V  + + T   G+ +GY
Sbjct: 63  ITRDGLELVGERYATSKFLNLADLNATSENFGFRGEALASISEVSLLEIVTRAYGRPNGY 122

Query: 136 RVSYRDGVMEHEPKPCAAVK----------GTQIMVENLFYNMAARRKTLQSSSDD-YSK 184
           R            K C  +           GT ++V  +FYN   RRK +QSS +     
Sbjct: 123 RKVL---------KGCKCIYLGIDDDRKEVGTTVIVSEIFYNQPVRRKQIQSSPNKVLQS 173

Query: 185 IVDLVSRFAIHHTNVGFSCRKHGAVKADVHTVSTSSRLDAIRSVYGVSVARNLVEIEASD 244
           I   V R A+   N+ F             + S +S L  + + +GV V  +L E+E  +
Sbjct: 174 IKKCVMRLALVCPNISFKVVDIEREYELFCSHSAASPLSLVTTGFGVEVTNSLHELEV-E 232

Query: 245 NDPSTSCFEMHGYISN-ANHAAKKITMVLFINDRLV 279
           ND      ++ GYIS   N    K    L+IN + V
Sbjct: 233 ND----IIKLTGYISGPCNTLDMKALQYLYINSQFV 264