Miyakogusa Predicted Gene

Lj3g3v1957750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1957750.1 tr|G7K8G8|G7K8G8_MEDTR HEAT repeat-containing
protein OS=Medicago truncatula GN=MTR_5g092370 PE=4
SV,67.96,0,seg,NULL; U3snoRNP10,U3 small nucleolar RNA-associated
protein 10; SUBFAMILY NOT NAMED,NULL; BAP28,N,CUFF.43382.1
         (800 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g092370.1 | U3 small nucleolar RNA-associated protein | HC...   941   0.0  

>Medtr5g092370.1 | U3 small nucleolar RNA-associated protein | HC |
            chr5:40340919-40358809 | 20130731
          Length = 2107

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/797 (64%), Positives = 598/797 (75%), Gaps = 39/797 (4%)

Query: 1    MIIGLLGNKAVLAPKLLNSLIRSVAEVAR--EEAKELMDLHWFRLSLIALINLIQSQNVE 58
            MI+ LLG+K  LAP LLN LIRSVA +AR  EEAK   DLHWFRLSLIALINL+QSQNV+
Sbjct: 256  MIVCLLGHKTTLAPSLLNGLIRSVAGIARACEEAK---DLHWFRLSLIALINLVQSQNVD 312

Query: 59   ILPMKALEILKDIRDLAGVLLELSKAFNIKKFLVVXXXXXXXXXXXXXXXQRALQSLIEK 118
             LP KAL++LK +RDL GVLLELSK FNI+KFLVV               Q+AL SLIEK
Sbjct: 313  TLPTKALDVLKKLRDLPGVLLELSKEFNIEKFLVVLLDSLIICSSKDEDCQQALLSLIEK 372

Query: 119  VPLHDSVYHIVTKILSTCVKLSQKVGDSTSLTSAGWAKKILIIVNTKYPSELRGAVPHFL 178
            VP++DSV+H+VTKILSTCVKLS+KVGDSTS  SAGWAK+IL IV+ KYPSELR AV HFL
Sbjct: 373  VPINDSVHHVVTKILSTCVKLSEKVGDSTSSMSAGWAKEILKIVDMKYPSELRAAVHHFL 432

Query: 179  QDNKTHSKKDDSLYKILCKMLDGNLDSSFDISESRVWFALYHPKADVRRATLLDINSSGI 238
            Q N  HSKKD+SLYKILCKMLDGNLDSS DIS+S+VWF LYHPKAD+RR TLLDINSSGI
Sbjct: 433  QHNTAHSKKDNSLYKILCKMLDGNLDSSSDISKSKVWFGLYHPKADIRRTTLLDINSSGI 492

Query: 239  LKSKEVVSESLVDIQEAILRQLDDKDLTVVQAALNVDGLPNIIGSYKLLEALQNVLKRCI 298
            LK+K  VSE L+DI EAILRQ DD+DLTVVQAALNVDG+ N+  S KLLEALQNVL+RC+
Sbjct: 493  LKNKAFVSEGLIDILEAILRQFDDEDLTVVQAALNVDGVENVPDSSKLLEALQNVLRRCV 552

Query: 299  GKLLSGSADNVNLTADVAVTCLKNAISYFHDHTDSLKKAAAMIFPCLLVIPQTQGLNLKA 358
            GK+LSGS DNV+LT +VAV+CLK AISYFHD    LK  AAMI+P LL +PQTQ LNLKA
Sbjct: 553  GKMLSGSTDNVSLTCEVAVSCLKKAISYFHDQ--KLKSIAAMIYPLLLAMPQTQDLNLKA 610

Query: 359  LALVNKMNWPLYQNIAMSTSGEVASIPGSLSSINLKTINNMAENFMVHSEDHVAWFVESC 418
            L LV ++NW LY NIA  T+    SIPG LSSINLK I  +A NFMVH ED++ WFV+SC
Sbjct: 611  LVLVKEINWQLYDNIAEETT----SIPGCLSSINLKVIEKLAGNFMVHHEDNIDWFVKSC 666

Query: 419  NDXXXXXXX-XXXXXXXXXXIKPKGD-DFSTLFESVYPILKAEWESLMSAGDVLLDEFNC 476
            ND                  IKPKGD DFS LFESV+PILKAEWES ++AGDVLLDEFN 
Sbjct: 667  NDTKLSKTLFFFVLLQSLVLIKPKGDNDFSALFESVFPILKAEWESSVNAGDVLLDEFNS 726

Query: 477  DNIDW--DCSAFFDHLSYANLRPLNAKVMVCIFWRLLAALISALPSDILQDDDAKWVSKI 534
            + +D   DCSAFFD L YA L PLNAKVM CIFWRL+ AL+S   S  L DD     SKI
Sbjct: 727  EVLDLNSDCSAFFDQLLYAKLGPLNAKVMSCIFWRLIKALVSEKSSGNLLDD-----SKI 781

Query: 535  KDLFVFFASSQFKHVFREHLHFLAAQCRISPPRLLSKFFTEEGVPAAVQVESLQCYAFLC 594
            KDLFVFFA S+F + F EHLHFLAAQ R +   LLSKFFT+EGVPA VQVESLQCY  LC
Sbjct: 782  KDLFVFFALSKFGNAFHEHLHFLAAQFRSA--HLLSKFFTDEGVPAVVQVESLQCYGSLC 839

Query: 595  SLSQDRWQTELLAEFSSVLVPLAGDNQAIRVAAMNCIDELHALWCRIERSGKKNGNNATW 654
            +L Q+  QT+LLAEF S+LVPLA D++++R A++ CI +LHALW RIE            
Sbjct: 840  TLQQNECQTDLLAEFPSLLVPLASDDKSVRDASLECIVKLHALWGRIEHG---------- 889

Query: 655  FHFLGELLWLLNEQKTLILSDKKFLPLLFASTL----SSSCHNILVPQNIENRFDQPTKQ 710
            F FL ELL  L + K LILSDKK L  LF S+L     SS HNIL+P N++NRF +  K+
Sbjct: 890  FQFLDELLTALVQIKKLILSDKKILSALFTSSLGSTPGSSYHNILLPPNMQNRFAK--KE 947

Query: 711  RIIDFILGSALKFSNYGKLMILTLLKEIGNA-IFHAKVEPLLSHFMKQYFDKRDKSCQKI 769
             I++FILG   KFSNYGKLMIL+LLK IGN  I H K+  +LS+ M++Y+DK   S QK 
Sbjct: 948  EILEFILGYTEKFSNYGKLMILSLLKGIGNPIIMHPKIASMLSNLMERYYDKHGNSFQKF 1007

Query: 770  SNIETQIMCLLLEGCVF 786
            SN ET+I+CLLLE CV 
Sbjct: 1008 SNTETRILCLLLENCVM 1024