Miyakogusa Predicted Gene

Lj3g3v1953400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1953400.1 Non Characterized Hit- tr|G7IVD5|G7IVD5_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,91.49,3e-19,
,TC76463.path1.1
         (49 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g010290.1 | VAMP-like protein | HC | chr3:2402422-2399809 ...    99   7e-22

>Medtr3g010290.1 | VAMP-like protein | HC | chr3:2402422-2399809 |
           20130731
          Length = 278

 Score = 99.4 bits (246), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/47 (91%), Positives = 45/47 (95%)

Query: 3   MRMRSAPQNIRRKWWRQVRIVLAIDAAVCIILFVIWLVICRGISCIR 49
           MR RS PQN+R+KWWRQVRIVLAIDAAVCIILFVIWLVICRGISCIR
Sbjct: 232 MRTRSGPQNVRKKWWRQVRIVLAIDAAVCIILFVIWLVICRGISCIR 278