Miyakogusa Predicted Gene

Lj3g3v1933120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1933120.1 CUFF.43372.1
         (162 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g010000.1 | photosystem I reaction center subunit V | HC |...   213   7e-56

>Medtr3g010000.1 | photosystem I reaction center subunit V | HC |
           chr3:2258475-2257987 | 20130731
          Length = 150

 Score =  213 bits (541), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 120/147 (81%), Gaps = 14/147 (9%)

Query: 17  TIQKSQTHLLKPSNVTFQGLRPLTRS-KVSTLSTPNKRVSRGFVVKAELNTSLVISLSTG 75
           TIQK +TH LKPS+++FQG  PLTRS KV+T  TP+K+     VVKAELN SL       
Sbjct: 17  TIQKHKTHNLKPSSLSFQGFNPLTRSTKVNTF-TPSKKRFSSLVVKAELNPSL------- 68

Query: 76  LSLFLGRFVFFNFQRENVAKQGLPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVL 135
                 RFVFFNFQRENVAKQGLPEQNG+THFEAGD RAKEYVSLLKSNDPVGFN+VDVL
Sbjct: 69  -----ERFVFFNFQRENVAKQGLPEQNGVTHFEAGDKRAKEYVSLLKSNDPVGFNLVDVL 123

Query: 136 AWGSIGHIVAYYILATASNGYDPSFFG 162
           AWGS+GHIVAYYILAT+SNGYDPSFFG
Sbjct: 124 AWGSLGHIVAYYILATSSNGYDPSFFG 150