Miyakogusa Predicted Gene

Lj3g3v1906600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1906600.1 Non Characterized Hit- tr|I0Z603|I0Z603_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,40.57,3e-18,NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT,NULL;
Complex1_LYR_2,NULL,CUFF.43285.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g040150.1 | NADH dehydrogenase [ubiquinone] 1 alpha subcom...   212   8e-56

>Medtr8g040150.1 | NADH dehydrogenase [ubiquinone] 1 alpha
           subcomplex subunit 6 | HC | chr8:14943934-14939663 |
           20130731
          Length = 133

 Score =  212 bits (540), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 96/132 (72%), Positives = 115/132 (87%)

Query: 1   MSNLLRSVRVPPNSVSLEEARHRVFDFFRIACRSLPSVMETYNLYDVASVSQLRSTVASE 60
           M+  +R+ +VPPNSV+L EAR RVF+FFR ACRSLP+VME YNLYDVA+VSQLRST+A+E
Sbjct: 1   MAQAIRNAKVPPNSVNLSEARQRVFEFFRSACRSLPTVMEVYNLYDVATVSQLRSTIAAE 60

Query: 61  IRKNTHVTDPKVIDMLLFKATEELKDIVDHAKQRHHVVGQYVVGRHKLEQQELGSKGQTI 120
           IRKN H+T+PKVIDMLLFK  EELK++V+H+KQRHH+VGQYVVGR  LEQQEL +K Q I
Sbjct: 61  IRKNDHITNPKVIDMLLFKGLEELKNVVNHSKQRHHIVGQYVVGRRGLEQQELAAKEQGI 120

Query: 121 SPFLQNFYKTNY 132
           S FL+NFY TNY
Sbjct: 121 SNFLKNFYDTNY 132