Miyakogusa Predicted Gene
- Lj3g3v1906470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1906470.1 tr|I1M0N3|I1M0N3_SOYBN DNA-directed RNA
polymerase OS=Glycine max GN=Gma.25522 PE=3
SV=1,86.2,0,RNA_pol_Rpb2_6,DNA-directed RNA polymerase, subunit 2,
domain 6; RNA_pol_Rpb2_3,RNA polymerase Rpb2,,CUFF.43307.1
(994 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g124030.1 | DNA-directed RNA polymerase | HC | chr4:511718... 1645 0.0
Medtr8g023445.1 | DNA-directed RNA polymerase | LC | chr8:845866... 340 3e-93
Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC ... 303 5e-82
Medtr3g105990.1 | DNA-directed RNA polymerase subunit beta | HC ... 297 3e-80
Medtr0002s0510.1 | DNA-directed RNA polymerase subunit beta | LC... 110 6e-24
Medtr4g051130.1 | DNA-directed RNA polymerase subunit beta | HC ... 99 3e-20
>Medtr4g124030.1 | DNA-directed RNA polymerase | HC |
chr4:51171803-51193467 | 20130731
Length = 1191
Score = 1645 bits (4260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 792/1007 (78%), Positives = 887/1007 (88%), Gaps = 19/1007 (1%)
Query: 1 MSTVRNSFSQRREGYTDKAVVIRCVRADQSSLTVKLYYLRNDSARLGFWVKGREYLLPVG 60
MSTVR+SFS+RREGYTDKAVVIRCVRADQ+SLTVKLY+LRN SARLGFW+ GREY+LPVG
Sbjct: 186 MSTVRSSFSERREGYTDKAVVIRCVRADQTSLTVKLYHLRNGSARLGFWIHGREYMLPVG 245
Query: 61 IVLKALIDTSDLEIRTNLKSCYNEKYEKGKGAVGTQRVDDRARMIIEEVRQLSL-FTRLQ 119
I+LKALIDT+D EI NL SCY+EKYEKGKG VGTQ V +RA++I++EV ++S FTRL+
Sbjct: 246 ILLKALIDTTDREIYANLTSCYSEKYEKGKGVVGTQLVGERAKIILDEVCEVSKKFTRLE 305
Query: 120 CLNYIGEHFQPILTELKNDSYDTVAKAVLKDYVFVHLDDNFDKFNLLIFMLQKLFSLVDG 179
CL YIGEHFQPI+ EL+N+S+ TVA VLK+Y+FVHL++NFDKFNLLIFMLQKLFSLVD
Sbjct: 306 CLEYIGEHFQPIMHELRNESHYTVADDVLKNYIFVHLENNFDKFNLLIFMLQKLFSLVDQ 365
Query: 180 TSVLDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQSGK----DEMKR-----KSG-TFDF 229
TSV DNPDSLQNQEVLLPGHLIT+YLK KLE+WL GK DE+KR K G FDF
Sbjct: 366 TSVPDNPDSLQNQEVLLPGHLITIYLKAKLEEWLAKGKTLLLDEIKRGGKIGKIGEKFDF 425
Query: 230 SEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGLDLQQRAGYTVQADRLNYLRFLSH 289
+ VKK +K A + +IE+ML TGRL T+ LDL Q +G T+QA+RLN+LRFLSH
Sbjct: 426 RKFHHVKKVLEKNHASGVGKAIESMLTTGRLATSIPLDLPQTSGLTLQAERLNFLRFLSH 485
Query: 290 FRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSYFDSQG 349
FR VHRGA FAGLRTTTVRKLLPESWGFLCPVHTPDG PCGLLNHMT TCRITS++DSQG
Sbjct: 486 FRHVHRGALFAGLRTTTVRKLLPESWGFLCPVHTPDGGPCGLLNHMTHTCRITSFYDSQG 545
Query: 350 SIKDYFKIKISILDILVDSGMTQLVPKLLLPGPPEVLTVLLDGCIVGCIPSGEVEKIVAH 409
+K+Y+KIK+SIL+IL++ GMTQ +PK+ LPGPPEVLTVLLDGCIVG IPS EVEK+VAH
Sbjct: 546 KVKNYYKIKLSILNILIEIGMTQSLPKIFLPGPPEVLTVLLDGCIVGYIPSTEVEKVVAH 605
Query: 410 IRELKVSSSAMIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFVRPVRNISILSNENKNIDL 469
IRELKVSS+A+IPDDLEVGYVPLSMGGAYPGLYLFTSPSRF+RPVRN+SI SN N+NI+L
Sbjct: 606 IRELKVSSAAVIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFIRPVRNLSIPSNGNENIEL 665
Query: 470 IGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANRTPWSDHNQSPRNMYQC 529
IGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVAN TPWSDHNQSPRNMYQC
Sbjct: 666 IGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQC 725
Query: 530 QMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYT 589
QMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTS YT+YNIDE+PTGTNAIVAVLAYT
Sbjct: 726 QMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSAYTEYNIDEFPTGTNAIVAVLAYT 785
Query: 590 GYDMEDAMILNKSSVERGMFHGQIYQTETVDLTEQGSRSDPSSRMFRKSNIEKS--KLDS 647
GYDMEDAMILNKSSVERGMFHGQIYQTET+DLTE GS+++ SS +FRKSN++K +DS
Sbjct: 786 GYDMEDAMILNKSSVERGMFHGQIYQTETIDLTELGSQAERSSTIFRKSNLDKGCHSIDS 845
Query: 648 DGLPHVGQMIRPDEPYCSIYNASTSSTHTLKKKGSEPVYVDYVAVDVKNKKDLQKVNIRF 707
DGLPHVGQMI PDEPYCSIYN T+ T ++KKG+EP Y+D VAVD+ KK +K NIRF
Sbjct: 846 DGLPHVGQMIGPDEPYCSIYNEVTNKTRLIRKKGTEPAYIDCVAVDL--KKHRRKANIRF 903
Query: 708 RHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLL 767
RHPRNP+IGDKFSSRHGQKGVCSQLWPD+DMPF G TGMRPDLIINPHAFPSRMTIAMLL
Sbjct: 904 RHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGNTGMRPDLIINPHAFPSRMTIAMLL 963
Query: 768 ESVAAKGGSLHGEFVNATPFRGSVKKDNGESEKSGLLLDDLGQMLREKGFNYHGLEVLYS 827
ESVAAKGGSLHG+F +ATPFR SV+ + KS L+D+LG ML+EKGFNYHG EVLYS
Sbjct: 964 ESVAAKGGSLHGKFKDATPFRSSVEPGS----KSASLVDELGDMLKEKGFNYHGCEVLYS 1019
Query: 828 GVYGKELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEME 887
GVYG ELTCEIFIGPVYYQRLRHMVSDK+QVRSTGTVDQ+TRQP FGEME
Sbjct: 1020 GVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQITRQPIKGRKRGGGIRFGEME 1079
Query: 888 RDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQPQKLPRREIGGLPPRKAP 947
RDSLLAHGAAYLLHDRLHTCSDYHIADVCS+CGSML+T+FI+PQK P R+I G+P R+AP
Sbjct: 1080 RDSLLAHGAAYLLHDRLHTCSDYHIADVCSICGSMLSTTFIEPQKRPVRDIPGIPVRRAP 1139
Query: 948 KKVICHACQTSKGMETVAMPYVFRYLAAEFAAMNIKMTLKLNNGASA 994
+KV CHACQTSKGMETVAMPY+FRYLAAE AAMNIKMTLKL+NGA+
Sbjct: 1140 RKVTCHACQTSKGMETVAMPYIFRYLAAELAAMNIKMTLKLSNGANV 1186
>Medtr8g023445.1 | DNA-directed RNA polymerase | LC |
chr8:8458667-8488921 | 20130731
Length = 2002
Score = 340 bits (873), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 275/952 (28%), Positives = 427/952 (44%), Gaps = 148/952 (15%)
Query: 106 IEEVRQLSLFTRLQCLNYIGE-----HFQPILTELKNDSYDTVAKAVLKDYVFVHLDDNF 160
IEE ++ +FT+ Q L+Y+ H + K + + V VH +
Sbjct: 1133 IEECTKIGIFTQAQALDYVDSKAVKRHVPGNMQPPKERQAFNILRETFLANVPVHGYNFR 1192
Query: 161 DKFNLLIFMLQKLFSLVDGTSVLDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQSGKDEM 220
K + M++++ + +D+ D + N+ + L G +I+L ED +S E+
Sbjct: 1193 PKCIYVAVMIRRIMDAILNKDAMDDKDYVGNKRLELSGQVISLLF----EDLFKSMTTEI 1248
Query: 221 K----------RKSGTFDFSEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGLDLQQ 270
K K+ FDF + + C I+ +E L TG +
Sbjct: 1249 KFAVDKLLDKPDKARKFDFLTQLINRDC--------ITPGLERTLSTGNF--DVKRFKMH 1298
Query: 271 RAGYTVQADRLNYLRFLSHFRAVHRGASFAGLRTTT-VRKLLPESWGFLCPVHTPDGEPC 329
++G T RL+++ L V F R + R L P WG LCP TP+GE C
Sbjct: 1299 KSGVTQVLQRLSFISALGQMTRVQ--PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESC 1356
Query: 330 GLLNHMTCTCRITSYFDSQGSIKDYFKIKISILDILVDSGMTQLVPKLLLPGPPEVLTVL 389
GL+ ++ +T+ + +G + IS+ +L M L + L P V+
Sbjct: 1357 GLVKNLALMTHVTTD-EEEGPL-------ISLCYLLGVENMEHLSGEEL--HTPNSFLVI 1406
Query: 390 LDGCIVGCIPSGEVEKIVAHIRELKVSSSAMIPDDLEVGYVPLSMGGAYPGLYLFTSPSR 449
+G I+G ++ +R+L+ + +I + +V + + +YL + R
Sbjct: 1407 FNGMILG--KHRRPQRFATAMRKLR--RACLIGE-----FVSVYVNEKQCCVYLASDGGR 1457
Query: 450 FVRPV-----------------------------RN--ISILSNENKNIDLIGPFEQVFM 478
RP+ RN I L +N LI +E
Sbjct: 1458 VCRPLVIADNGISRVKAHHMKELKDGVCAFRDFLRNGLIEYLDVNEENNALIALYE---- 1513
Query: 479 EIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANRTPWSDHNQSPRNMYQCQMAKQTMAF 538
+ ++ TH EI P +L V+A P+ HNQSPRN YQC M KQ M
Sbjct: 1514 -----------KDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 1562
Query: 539 SSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMI 598
+ R D LY L PQ P++ T + D+ G NA VAV++Y+GYD+EDA++
Sbjct: 1563 IAYNQLRRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 1622
Query: 599 LNKSSVERGMFHGQIYQTETVDLTEQGSRSDPSSRMFRKSNIEKSK--LDSDGLPHVGQM 656
+NKSS++RG G+ + Q + R+ R + LD DG+ G++
Sbjct: 1623 MNKSSLDRGF--GRCIVMKRYAAVRQKYSNGTEDRIERPDRALNNMQILDDDGIASPGEI 1680
Query: 657 IRPDEPY---------------CSIYNASTSSTHTLKKKGSEPVYVDYVAVDVKNKKDLQ 701
IRP + Y ++ +++ S ++ K VD VA + N KD
Sbjct: 1681 IRPTDIYINKKSPTETQNKVSSTNLPDSAYRSNYSTFNKCHGGEVVDKVA--LCNDKD-S 1737
Query: 702 KVNIRF--RHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPS 759
+ I+F RH R P +GDKFSSRHGQKGVC + D PF G+ PDLI+NPH FPS
Sbjct: 1738 NMCIKFLTRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPF-SEKGICPDLIMNPHGFPS 1796
Query: 760 RMTIAMLLESVAAKGGSLHGEFVNATPFRGSVKKDNGESEKSGLLLDDLGQMLREKGFNY 819
RMT+ ++E + K G G+F + F +++G ++K ++ + + L + GFNY
Sbjct: 1797 RMTVGKMIELLGGKAGVSCGKFHYGSAF----GEESGHADK----VETISKTLVKHGFNY 1848
Query: 820 HGLEVLYSGVYGKELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXX 879
G + +YSG+ G L IF+GP+YYQ+L+HMV DK R +G +TRQP
Sbjct: 1849 SGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPKALITRQPTEGRARNG 1908
Query: 880 XXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQPQKLPRREIG 939
GEMERD L+A+GA+ L+ +RL SD + VC CG +
Sbjct: 1909 GLRVGEMERDCLIAYGASMLIFERLMLSSDPYEVQVCRACGLL----------------- 1951
Query: 940 GLPPRKAPKKVICHACQTSKGMETVAMPYVFRYLAAEFAAMNIKMTLKLNNG 991
G K K +C +C+ K + T+ +PY + L E +MNI LKL +
Sbjct: 1952 GYYNHKL-KAGVCSSCKNGKQISTMKLPYACKLLIQELQSMNIVPRLKLEDA 2002
>Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC |
chr1:7523400-7533496 | 20130731
Length = 1195
Score = 303 bits (777), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 274/999 (27%), Positives = 427/999 (42%), Gaps = 171/999 (17%)
Query: 57 LPVGIVLKALIDTSDLEIRTNLKSCYNEKYEKGKGAVGTQRVDDRARMIIEEVRQLSLFT 116
+P+ IV +AL +D +I ++ CY+ ++ + R +EE +
Sbjct: 275 IPIIIVFRALGFVADKDILEHI--CYD---------FADTQMMELLRPSLEEA--FVIQN 321
Query: 117 RLQCLNYIGEHFQPI-LTELKNDSYDTVAKAVLKDYVFVHLDD----NFDKFNLLIFMLQ 171
+ L+YIG+ + +T+ K Y AK +L+ + H+ K +++
Sbjct: 322 QQVALDYIGKRGSTVGVTKEKRIKY---AKDILQKEMLPHVGVGEYCETKKAYYFGYIIH 378
Query: 172 KLFSLVDGTSVLDNPDSLQNQEVLLPGHLI-----TLY--LKEKLEDWLQSGKDEMKRKS 224
+L G D+ D N+ + L G L+ L+ L + ++Q D K
Sbjct: 379 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGK--- 435
Query: 225 GTFDFSEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGLDLQQRAGYTVQADRLNYL 284
D + F +K A+ I++ ++ L TG RAG + +RL Y
Sbjct: 436 ---DVNLQFAIK-------AKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYA 483
Query: 285 RFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSY 344
LSH R ++ G + R+L WG +CP TP+G+ CGL+ ++ IT
Sbjct: 484 STLSHLRRLNSPIGREG-KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV- 541
Query: 345 FDSQGSIKDYFKIKISILDILVDSG---MTQLVPKLLLPGPPEVLTVLLDGCIVGC--IP 399
GS IL+ L + G ++ P ++ P+ + ++GC +G P
Sbjct: 542 ----GS------AAYPILEFLEEWGTENFEEISPAVI----PQATKIFVNGCWMGIHRDP 587
Query: 400 SGEVEKIVAHIRELKVSSSAMIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFVRP--VRNI 457
V + R + V++ + D+ + L ++T R RP + +
Sbjct: 588 DMLVRTLRKLRRRVDVNTEVGVVRDIRL-----------KELRIYTDYGRCSRPLFIVDK 636
Query: 458 SILSNENKNIDLIGPFEQVFMEIRCPDGG--DGGRKSSFPATHEEIHPTGMLSVVAN--- 512
L + K+I + E DGG D K E T M+S+ N
Sbjct: 637 QRLLIKKKDIHSLQQRESP------EDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLV 690
Query: 513 ------RTPWSD------------------------HNQSPRNMYQCQMAKQTMAFSSQT 542
+SD HNQSPRN YQ M KQ M
Sbjct: 691 QARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 750
Query: 543 IQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 602
Q R D Y L PQ P+V T + + P G NAIVA+ Y+GY+ ED++I+N+S
Sbjct: 751 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQS 810
Query: 603 SVERGMFHGQIYQTETVDLTEQGS-------RSDPSSRMFRKSNIEKSKLDSDGLPHVGQ 655
S++RG F +++ + + G+ R D ++ M + KLD DGL G
Sbjct: 811 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHG-SYDKLDDDGLAPPGT 869
Query: 656 MIRPDE-------PYCSIYNASTSS-----THTLKKKGSEPVYVDYVAVDVKNKKDLQKV 703
+ ++ P ++ H++ + SE VD V + N L+ V
Sbjct: 870 RVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHSISLRHSETGIVDQVLL-TTNADGLRFV 928
Query: 704 NIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTI 763
+R R R P IGDKFSSRHGQKG + DMP+ G+ PD+I+NPHA PSRMTI
Sbjct: 929 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT-VEGITPDIIVNPHAIPSRMTI 987
Query: 764 AMLLESVAAKGGSLHGEFVNATPFRGSVKKDNGESEKSGLLLDDLGQMLREKGFNYHGLE 823
L+E + K + G+ +ATPF + + +D++ + L + G+ G E
Sbjct: 988 GQLIECIMGKVAAHMGKEGDATPF-------------TDVTVDNISKALHKCGYQMRGFE 1034
Query: 824 VLYSGVYGKELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXF 883
+Y+G G+ L+ IF+GP YYQRL+HMV DK R G V +TRQP F
Sbjct: 1035 TMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1094
Query: 884 GEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQPQKLPRREIGGLPP 943
GEMERD ++AHGAA+ L +RL SD + VC CG ++A + ++
Sbjct: 1095 GEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCG-LIAIANLKKNSFE--------- 1144
Query: 944 RKAPKKVICHACQTSKGMETVAMPYVFRYLAAEFAAMNI 982
C C+ + V +PY + L E AM I
Sbjct: 1145 --------CRGCKNKTDIVQVYIPYACKLLFQELMAMAI 1175
>Medtr3g105990.1 | DNA-directed RNA polymerase subunit beta | HC |
chr3:48883860-48876376 | 20130731
Length = 1188
Score = 297 bits (761), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 251/877 (28%), Positives = 405/877 (46%), Gaps = 99/877 (11%)
Query: 151 YVFVHLDDNFDKFNLLIFMLQKLFSLVDGTSVLDNPDSLQNQEVLLPGHLITLYLKEKLE 210
YVF ++ K L +M++ L G DN D +N+ + L G L+ +K
Sbjct: 367 YVFPNVKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFA 426
Query: 211 DWLQSGKDEMKRKSGTFDFSEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGLDLQQ 270
+ ++R + E+ ++ D A I+ ++ TG T+ +++
Sbjct: 427 HARKRMGKALQRD--LYGEREVRQIEHYLD---ASIITNGLQRAFSTGAW-THPFKRMER 480
Query: 271 RAGYTVQADRLNYLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCG 330
+G R N L+ ++ R + + G + R P WG +C + TPDGE CG
Sbjct: 481 ISGVVATLGRTNPLQTMAELRRTRQQVQYTG-KVGDARYPHPSHWGKVCFLSTPDGENCG 539
Query: 331 LLNHMTCTCRITSYFDSQGSIKDYFKIKISILDILVDSGMTQLVPKLL-LPGPPEVLTVL 389
L+ ++ T +++ + SIL L D GM +LV + G + V
Sbjct: 540 LVKNLAVTGVVST------------DVTESILPQLSDCGMEELVDDTTTVLGKKD--KVF 585
Query: 390 LDGCIVGCIPSGEVEKIVAHIRELKVSSSAMIPDDLEVGYVPLSMGGAYPGLYLFTSPSR 449
L+G VG + S + VA +R + + +P +E+ + + + R
Sbjct: 586 LNGDWVG-VCSDSIS-FVAELRTRRRRNE--LPHQVEI-----KRDQCQQEVRILSDAGR 636
Query: 450 FVRPVRNISIL------SNENKN---------IDLIGPFEQ----VFMEIRCPDGGDGGR 490
+RP+ +S L +E+K+ I+LIGP E+ ++ G +G
Sbjct: 637 ILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVIELIGPEEEEDFKTAWGVQYLFGKEG-- 694
Query: 491 KSSFPATHEEIHPTGMLSVVANRTPWSDHNQSPRNMYQCQM-AKQTMAFSSQTIQHRADQ 549
KSS TH E+ + +L + + P+++H+ + R +YQ Q + Q + F++ R D
Sbjct: 695 KSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFATTNPNIRVDA 754
Query: 550 KLYHLQTPQTPIVRTSTYTKYNI------------DEYPTGTNAIVAVLAYTGYDMEDAM 597
+ L PQ P+ +T T E+ G NAIVAV + GY+ ED++
Sbjct: 755 LSHQLFYPQRPLFQTMTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSL 814
Query: 598 ILNKSSVERGMF---HGQIYQTETVDLTEQGSRSDPSSRM-FRK--SNIEK-SKLDSDGL 650
++N++S++RGMF H + Y+ E + R P + F K S I + LD DG
Sbjct: 815 VMNRASLQRGMFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGF 874
Query: 651 PHVGQMIRPDEPYCSIYNASTSSTHTLKKKGSEPVYVDYVAVDVKNKKDLQKVNIRFRHP 710
P VG ++ + A + + H++K K +E YV V + N + + R
Sbjct: 875 PFVGANLQSGDIIIG-RCADSGTDHSIKLKHTERGYVQKVVLS-SNDEGKNFAVVSLRQV 932
Query: 711 RNPVIGDKFSSRHGQKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESV 770
R+PV+GDKFSS HGQKGV L + PF G+ PD++INPHAFPSR T LLE+
Sbjct: 933 RSPVLGDKFSSMHGQKGVLGFLESQENFPFT-KQGIVPDIVINPHAFPSRQTPGQLLEAA 991
Query: 771 AAKGGSLHGEFVNATPFRGSVKKDNGESEKSGLLLDDLGQMLREKGFNYHGLEVLYSGVY 830
KG + G NATPF S ++ + L GF+ G E +Y+G
Sbjct: 992 LGKGIACVGSLRNATPFSTSS-------------VEAITDQLHRAGFSRWGNERVYNGRT 1038
Query: 831 GKELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDS 890
G+ + IF+GP +YQRL HM DK + R+TG V +TRQP FGEMERD
Sbjct: 1039 GEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1098
Query: 891 LLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQPQKLPRREIGGLPPRKAPKKV 950
L+AHGA+ L++RL T SD +CS C + +A ++P + G + P
Sbjct: 1099 LIAHGASANLYERLFTLSDSSQIHICSKCKN-VANVILRP-------VSGGRKIRGP--- 1147
Query: 951 ICHACQTSKGMETVAMPYVFRYLAAEFAAMNIKMTLK 987
C C+++ + ++PY + L+ E +M I + +
Sbjct: 1148 YCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFE 1184
>Medtr0002s0510.1 | DNA-directed RNA polymerase subunit beta | LC |
scaffold0002:218431-229740 | 20130731
Length = 3148
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 158/376 (42%), Gaps = 47/376 (12%)
Query: 574 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM---FHGQIYQTETVDLTEQGSRSDP 630
E G N +VA + + GY+ EDA+++++ V + FH + Y+ +T D T QGS
Sbjct: 709 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQT-DTTSQGSAEKI 767
Query: 631 SSRMFRKSNIEKSKLDSDGLPHVGQMIR----------PDEPYCSIYNA----------- 669
+ + LD +G+ +G + P S Y A
Sbjct: 768 TKEIPHLEEHLLRNLDKNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGL 827
Query: 670 --STSSTHTLKKKGSEPVYVDYVAVDVKN-KKDLQKVNIR--FRHPRNPVIGDKFSSRHG 724
STS +LK P+ +DVK ++D + +R R +GDK + RHG
Sbjct: 828 EVSTSKETSLKL----PIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHG 883
Query: 725 QKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGEFVNA 784
KG+ S++ P DMP+ G D++ NP PSRM + + ES G L +
Sbjct: 884 NKGIISKILPRQDMPYL-QDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRI 942
Query: 785 TPFRGSVKKDNGESEKS-GLLLDDLGQMLREKGF------NYHGLEVLYSGVYGKELTCE 837
PF + E E S L+ +L + +E Y G ++ G G
Sbjct: 943 APF-----DERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPFEQP 997
Query: 838 IFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDSLLAHGAA 897
+ IG Y +L H V +K RSTG VT+QP GEME +L G A
Sbjct: 998 VLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRVGEMEVWALEGFGVA 1057
Query: 898 YLLHDRLHTCSDYHIA 913
++L + L SD+ IA
Sbjct: 1058 HILQEILTYKSDHLIA 1073
>Medtr4g051130.1 | DNA-directed RNA polymerase subunit beta | HC |
chr4:18155924-18149828 | 20130731
Length = 1748
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 159/392 (40%), Gaps = 34/392 (8%)
Query: 574 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM---FHGQIYQTETVDLTEQGSRSDP 630
E G N +VA + + GY+ EDA+++++ V + FH + Y+ +T +T G
Sbjct: 635 ELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQT-HVTSHGPERIT 693
Query: 631 SSRMFRKSNIEKSKLDSDGLPHVGQMIR----------PDEPYCSIY------------- 667
+ ++++ ++ LD +G+ +G + P S Y
Sbjct: 694 NKIPHLEAHLLRN-LDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI 752
Query: 668 NASTSSTHTLK---KKGSEPVYVDYVAVDVKNKKDLQKVNIRFRHPRNPVIGDKFSSRHG 724
STS LK + V ++ + + + ++I R +GDK + RHG
Sbjct: 753 QVSTSKETCLKLPIGGRGRVIDVRWIQKKAGSSYNPETIHIYISQKREIKVGDKVAGRHG 812
Query: 725 QKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGEFVNA 784
KG+ S++ DMP+ G D++ NP PSRM + +LE GS+
Sbjct: 813 NKGIVSKILSRQDMPYL-QDGRPVDMVFNPLGVPSRMNVGQILECSLGLAGSMLNRHYRI 871
Query: 785 TPFRGSVKKDNGESEKSGLLLDDLGQMLREKGFN--YHGLEVLYSGVYGKELTCEIFIGP 842
PF +++ L + Q F Y G ++ G G + IG
Sbjct: 872 APFDERYEQEASRKLVFSELYEASKQTSNPWIFEPEYPGKSGIFDGRTGNLFEQPVIIGK 931
Query: 843 VYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHD 902
Y +L H V DK RS+G VT+QP GEME +L G A++L +
Sbjct: 932 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 991
Query: 903 RLHTCSDYHIADVCSLCGSMLATSFIQPQKLP 934
L SD+ A L +++ + +P P
Sbjct: 992 MLTYKSDHIKARQEVLGTTIIGGTIPKPVDAP 1023