Miyakogusa Predicted Gene

Lj3g3v1896450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1896450.1 Non Characterized Hit- tr|I1M0N0|I1M0N0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55983 PE,88.62,0,no
description,NULL; RNase_T,Exonuclease, RNase T/DNA polymerase III;
zf-GRF,Zinc finger, GRF-type; ,CUFF.43408.1
         (411 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g061030.1 | histone mRNA exonuclease | HC | chr8:21144124-...    86   9e-17

>Medtr8g061030.1 | histone mRNA exonuclease | HC |
           chr8:21144124-21147648 | 20130731
          Length = 308

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 18/200 (9%)

Query: 132 QEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPT--CNQHLT 189
           Q   +F+V+D E            EI+EFP + +S+ T ++E  F  +VRP+    Q + 
Sbjct: 99  QNHDFFLVLDLEGKV---------EILEFPVLKISAKTLKVEDIFHRFVRPSNMSEQRIN 149

Query: 190 DFCKDL---TGIQQIQVDRGVTLSEALLRHDKWLEKKGI-KNANF---AVVTWSNWDCRV 242
           ++ +      G+ ++  D  +   E +   + WL ++ +    N    A VT  NWD + 
Sbjct: 150 EYIEGKYGKIGVDRVWHDTAIPFKEVIEEFEAWLVQQKLWTGGNLDRAAFVTCGNWDLKT 209

Query: 243 MLESECRFKKIRKPPYFNRWINLRIPFREVFGAVKCNLKEAVEIAGLAWQGRAHCGLDDA 302
            +  +C   +I+ PPYF  WINL+  +   +      +   ++   +   G  H G+DD 
Sbjct: 210 KVPQQCEVSRIKVPPYFMEWINLKDIYLNFYNRRATGMVTMMKELQMPLVGSHHLGIDDT 269

Query: 303 KNTARLLALLMHKGFKFSIT 322
           KN  R+L  ++  G    IT
Sbjct: 270 KNITRVLQHMLVDGALIQIT 289