Miyakogusa Predicted Gene

Lj3g3v1896330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1896330.1 Non Characterized Hit- tr|I1MIM1|I1MIM1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46928
PE,85.66,0,seg,NULL; RB_A,Retinoblastoma-associated protein, A-box;
RB_B,Retinoblastoma-associated protein, B-b,CUFF.43275.1
         (1022 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g040560.1 | retinoblastoma-related protein | HC | chr8:151...  1649   0.0  
Medtr3g006170.1 | retinoblastoma-related protein, putative | HC ...    89   2e-17

>Medtr8g040560.1 | retinoblastoma-related protein | HC |
            chr8:15105699-15098148 | 20130731
          Length = 1025

 Score = 1649 bits (4271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 828/1028 (80%), Positives = 885/1028 (86%), Gaps = 9/1028 (0%)

Query: 1    MSPPAAADMEDVKPSV-DNADQADSRFADFCKNGLALDEKSCKEAMNLFGKTKHILLTNV 59
            MSP A  +MED K SV +N DQA SRFA+F KN LALDEKSCKEAM+LFG+TKH+L+ NV
Sbjct: 1    MSPSAETEMEDTKLSVVENGDQAVSRFAEFSKNELALDEKSCKEAMDLFGETKHLLMANV 60

Query: 60   SSMGNGTSEDAERYWFAFILYSVKRLTQNSEESGQEEVENTGLTLCRILRAANLNIADFS 119
            SSMGNGT E+AERYWFAFILYS+KRLTQ +EES +EE+ENTGLTLCRILRAA LNIADF 
Sbjct: 61   SSMGNGTIEEAERYWFAFILYSIKRLTQKNEESEKEEIENTGLTLCRILRAAKLNIADFF 120

Query: 120  KELSQFVVKAGQILSNLYGTDWENWLKAKEMHANATQLEILSKYYKRIFGEFFVAPDANV 179
            KEL QFVVKAG ILSN +G+DWEN L+AKEMHAN   L+ILSKYYKR+F EFFV+ DANV
Sbjct: 121  KELPQFVVKAGPILSNRFGSDWENKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTDANV 180

Query: 180  EKNSIVTVHASDYHRFGWLLFLALRAHAFSRFINLVTCTNGLISILAILIIHVPARFRNF 239
            E  S VT   S+ HRFGWLLFLALR HAFSRF +LVTCTNGLISI+AILIIHVPARFRNF
Sbjct: 181  ENKSSVTGRVSECHRFGWLLFLALRVHAFSRFKDLVTCTNGLISIMAILIIHVPARFRNF 240

Query: 240  NINDSSRFVKKSSKGVDLLASLCKIYNTSEDELRKTMEIANSLIADILKKKPCLASECET 299
            NI+DS+RFVKKSSKGVDLLASLC IYNTSEDELRKTME AN+L+ADILKK PCLASECET
Sbjct: 241  NIHDSARFVKKSSKGVDLLASLCNIYNTSEDELRKTMEQANNLVADILKKTPCLASECET 300

Query: 300  ENLENFDRDSLTYFKDLMEELSLPSSLNILEKDYDVMIHDKGELDERLFVNEDD-RXXXX 358
            ENLE+FD+D LTYFKDLMEE SL SSLNILE DYD M  +KGELDERLF+NEDD      
Sbjct: 301  ENLEDFDKDGLTYFKDLMEESSLASSLNILENDYDQMTRNKGELDERLFINEDDSLLASG 360

Query: 359  XXXXXXXXXXXXXKRKFDSIASPAKTVMSPLSPHRSPASSANGIPGSTNSKMAAATPVST 418
                         KRK+D + SPAKT+ SPLSP RSPAS ANGIPGS NSK+ AATPVST
Sbjct: 361  SLSGGSSVSAGGVKRKYDLMMSPAKTITSPLSPQRSPASHANGIPGSANSKI-AATPVST 419

Query: 419  AMTTAKWLRTVISPLAPKPSQELERFLASCDRDITSDVVRRTLIILQAIFPSSPLGERCV 478
            AMTTAKWLRTVISPL  KPSQELERFL SCDRDITS+VVRR  IILQAIFPSSPLG+RCV
Sbjct: 420  AMTTAKWLRTVISPLPSKPSQELERFLTSCDRDITSEVVRRAQIILQAIFPSSPLGDRCV 479

Query: 479  TGGLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCML 538
            TG LQSANLMDNIWAEQRRLEA+KLYYR+L  MCRAEAQ L   NLTSLLTNERFHRCML
Sbjct: 480  TGSLQSANLMDNIWAEQRRLEAMKLYYRLLATMCRAEAQIL-GNNLTSLLTNERFHRCML 538

Query: 539  ACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEER 598
            ACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIR+EESLPRELRRHLNSLEER
Sbjct: 539  ACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEER 598

Query: 599  LLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAININFSYGGLPPVPT 658
            LLES+VWEKGSSMYNSLAVARPALSAEINRLG+LAEPMPSLDEIA+ INFS GGLPPVP+
Sbjct: 599  LLESLVWEKGSSMYNSLAVARPALSAEINRLGMLAEPMPSLDEIAMQINFSCGGLPPVPS 658

Query: 659  LPKFETSPIQNGDTRSPKRLCTEHRNVLVERNSFASPVKDRXXXXXXXXXXXXXXXXXXX 718
            LPK ET P QNGD RSPKRLCTE+RNVLVERNSF SPVKDR                   
Sbjct: 659  LPKPETLPAQNGDMRSPKRLCTENRNVLVERNSFTSPVKDR-LLHLSNLKSKLLPPPLQS 717

Query: 719  XXXXXTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQR 778
                 TKPNPGGGGETCAETGI++FF KI+KLGAVRISGMVERLQLSQQIRENVY LFQR
Sbjct: 718  AFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYSLFQR 777

Query: 779  ILNQWTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPHCKPQVFRSVFVDW 838
            ILNQWTSLFFNRHIDQIILCCFYGVAKISQL+LTFREIIYNYRKQP CKPQVFRSVFVDW
Sbjct: 778  ILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDW 837

Query: 839  SSARRNGACKQRIGQDHVDIISFYNEVFIPSVKPLLVELGPGGATMKSDRKPEV-NKNDA 897
            SSARRNG  + R GQ+H+DIISFYNEVFIPSVKPLLVELGPGGAT++SD+ PE  NKND 
Sbjct: 838  SSARRNGGSRHRTGQEHIDIISFYNEVFIPSVKPLLVELGPGGATVRSDQVPEANNKNDG 897

Query: 898  HC---PGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSSKMDALISHSSKSYYACVGEST 954
            H    PGSP+ISPFPSLPDMSPKKVSA+HNVYVSPLRSSKMDALISHSSKSYYACVGEST
Sbjct: 898  HLVQNPGSPRISPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGEST 957

Query: 955  HAYQSPSKDLTAINNRLNGNRKVRGALNFDDADVGLVSDSLVSNSLYQQNXXXXXXXXAP 1014
            HAYQSPSKDLTAINNRLN NRKVRG L FDD DVGLVSDS+V+NSLY QN        AP
Sbjct: 958  HAYQSPSKDLTAINNRLNSNRKVRGPLKFDDVDVGLVSDSMVANSLYLQNGSSASSSGAP 1017

Query: 1015 LKSELLDS 1022
            LKSE  DS
Sbjct: 1018 LKSEQPDS 1025


>Medtr3g006170.1 | retinoblastoma-related protein, putative | HC |
           chr3:570880-569693 | 20130731
          Length = 155

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 4/68 (5%)

Query: 159 ILSKYYKRIFGEFFVAPDANVEKNSIVTVHASDYHRFGWLLFLALRAHAFSRFINLVTCT 218
           ++  YYKR+F EFFV+ DANVE  S VT   S+ HRFGWLLF+    HAFSRF +LVTCT
Sbjct: 27  VIPWYYKRVFEEFFVSTDANVENKSSVTNRISECHRFGWLLFV----HAFSRFKDLVTCT 82

Query: 219 NGLISILA 226
           NGLISI+ 
Sbjct: 83  NGLISIMT 90