Miyakogusa Predicted Gene

Lj3g3v1886310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1886310.1 Non Characterized Hit- tr|C6TDB6|C6TDB6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.17218 PE,92.91,0,ORF
PROTEIN,Protein of unknown function DUF667; DUF667,Protein of unknown
function DUF667,CUFF.43278.1
         (127 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g040630.1 | transcription factor IIB | HC | chr8:15129690-...   224   2e-59

>Medtr8g040630.1 | transcription factor IIB | HC |
           chr8:15129690-15134086 | 20130731
          Length = 218

 Score =  224 bits (570), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/113 (93%), Positives = 109/113 (96%)

Query: 1   MFKNTFQSGFLSILYSLGSKPLQIWDKEVVNGHVKRPQDEDIQSNVLEIIGSNIQSTYIT 60
           MFKNTFQSGFLSILYSLGSKPLQIWDKEVV+GH+KRPQDEDIQSNVLEIIGSNIQSTYIT
Sbjct: 30  MFKNTFQSGFLSILYSLGSKPLQIWDKEVVDGHIKRPQDEDIQSNVLEIIGSNIQSTYIT 89

Query: 61  CPADPAATLGIKLPFLVMIVKNLKKFFTFEIQVLDDKNVRRRFRASNFQVCCH 113
           CPADPAATLGIKLPFLVMIVKNLKK+FTFEIQVLDDKNVRRRFRASNFQ    
Sbjct: 90  CPADPAATLGIKLPFLVMIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAVTR 142