Miyakogusa Predicted Gene

Lj3g3v1729100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1729100.1 tr|A4S1R9|A4S1R9_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_42421,47.13,5e-17,seg,NULL; coiled-coil,NULL,TC74779.path1.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g098440.1 | Pre-mRNA-splicing factor ATP-dependent RNA hel...   104   2e-23
Medtr3g054400.1 | pre-mRNA-splicing factor ATP-dependent RNA hel...    97   2e-21

>Medtr2g098440.1 | Pre-mRNA-splicing factor ATP-dependent RNA helicase
            | HC | chr2:42091662-42101447 | 20130731
          Length = 1269

 Score =  104 bits (259), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/96 (55%), Positives = 57/96 (59%)

Query: 1    MQCATAVEPHWLAELGPMFFSVKESDTSLLXXXXXXXXXXXXXXXXXXNLKKVXXXXXXX 60
            MQCATAVEP W+AELGPMFFSVKESDTSLL                  NLKK        
Sbjct: 1174 MQCATAVEPQWMAELGPMFFSVKESDTSLLEHKKKQKREKTAMEEEMENLKKEQAELERE 1233

Query: 61   XXXXXXXXXXXHQQQISMPGLRKGSSTYLRPKKFGL 96
                        QQQIS+PGL+KGSST+LRPKKFGL
Sbjct: 1234 NKRKEKEKRAKSQQQISIPGLKKGSSTFLRPKKFGL 1269


>Medtr3g054400.1 | pre-mRNA-splicing factor ATP-dependent RNA helicase
            PRP16 | HC | chr3:21592985-21589785 | 20130731
          Length = 1066

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 56/96 (58%)

Query: 1    MQCATAVEPHWLAELGPMFFSVKESDTSLLXXXXXXXXXXXXXXXXXXNLKKVXXXXXXX 60
            MQCATAVEP W+AELGPMFFSV ESDTSL+                  NLKK        
Sbjct: 971  MQCATAVEPKWMAELGPMFFSVTESDTSLMEHKKKQKREKTAIEEEVENLKKEQAKFERE 1030

Query: 61   XXXXXXXXXXXHQQQISMPGLRKGSSTYLRPKKFGL 96
                       +QQQIS+PGL+K SST+LRPKKFGL
Sbjct: 1031 NKRKEIEKRAKNQQQISIPGLKKCSSTFLRPKKFGL 1066