Miyakogusa Predicted Gene

Lj3g3v1666020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1666020.1 Non Characterized Hit- tr|A5AWG7|A5AWG7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,22.61,0.0000003,B3,B3 DNA binding domain; DNA-binding pseudobarrel
domain,DNA-binding pseudobarrel domain; seg,NULL;,CUFF.42978.1
         (274 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005440.1 | B3 DNA-binding domain protein | LC | chr3:2030...    49   6e-06

>Medtr3g005440.1 | B3 DNA-binding domain protein | LC |
           chr3:203074-205412 | 20130731
          Length = 442

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 17  FSVELDPKMEHLQVPSDFYEKHKTALGDRVVIMDPVGGEFSFRLLAGNLGGLIFEC--VA 74
           FS+  + ++  +Q+P +F  +    L +   I  P G E+   L     GG +F C    
Sbjct: 23  FSLRFEVRLSLVQIPDEFITRFGNELDNVATITVPDGREWDMEL--KKCGGQVFFCNNWQ 80

Query: 75  EFLRRYGLKENHLCDFFYFGKNTFIVKILDGTLKEISYGVGTS 117
            F   Y +      DF Y G + F+V I D T  EISY   TS
Sbjct: 81  HFAEYYSISYGCYLDFKYEGNSNFVVVIYDPTFVEISYPFKTS 123