Miyakogusa Predicted Gene

Lj3g3v1631800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1631800.1 tr|I0Z597|I0Z597_9CHLO Mitochondrial import inner
membrane translocase subunit Tim9 OS=Coccomyxa
sub,44.94,3e-17,MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE
SUBUNIT TIM9,NULL; zf-Tim10_DDP,Mitochondrial inner
,NODE_75838_length_678_cov_10.312684.path2.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g063925.1 | import inner membrane translocase protein | HC...   142   6e-35
Medtr4g021715.1 | import inner membrane translocase protein | HC...   106   5e-24
Medtr4g021670.1 | plant self-incompatibility protein S1 family p...    64   4e-11

>Medtr4g063925.1 | import inner membrane translocase protein | HC
          | chr4:23812038-23816439 | 20130731
          Length = 93

 Score =  142 bits (359), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 81/93 (87%)

Query: 1  MDKKVIADLDNLPEEDKQRMSTMVDQLQTRDSLRMYNSIVERCFKNCVNTFYRKSLTKHE 60
          MDK +IAD++NLPE DKQRM+TM+DQLQ RDSLRMYN++VERCF +CV+TF  KSL K E
Sbjct: 1  MDKSMIADMENLPEADKQRMATMIDQLQIRDSLRMYNNLVERCFHDCVDTFKHKSLQKQE 60

Query: 61 ETCVLRCAEKFVRLSTQVGLRFSDLNLGASTKD 93
          ETCV RCAEKF++ S +VG+RF++LN GA+T+D
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATQD 93


>Medtr4g021715.1 | import inner membrane translocase protein | HC
          | chr4:7149259-7146659 | 20130731
          Length = 78

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 65/93 (69%), Gaps = 17/93 (18%)

Query: 1  MDKKVIADLDNLPEEDKQRMSTMVDQLQTRDSLRMYNSIVERCFKNCVNTFYRKSLTKHE 60
          MDK +  ++DNLPEEDK+RM+TMV+QLQTRDS                 +FYR SL K E
Sbjct: 1  MDKNIFGEVDNLPEEDKKRMTTMVEQLQTRDS-----------------SFYRSSLNKPE 43

Query: 61 ETCVLRCAEKFVRLSTQVGLRFSDLNLGASTKD 93
          ETCVLRCA K++R S+ VG++FSD+N GAST D
Sbjct: 44 ETCVLRCAGKYLRFSSHVGVKFSDINQGASTTD 76


>Medtr4g021670.1 | plant self-incompatibility protein S1 family
           protein | LC | chr4:7116535-7115075 | 20130731
          Length = 226

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 40/67 (59%), Gaps = 15/67 (22%)

Query: 27  LQTRDSLRMYNSIVERCFKNCVNTFYRKSLTKHEETCVLRCAEKFVRLSTQVGLRFSDLN 86
            Q   SL +YNS+VERCF NCV TFYR SL K               LS+QV ++FSD+N
Sbjct: 130 FQQNCSLGLYNSLVERCFNNCVKTFYRSSLNK---------------LSSQVSVKFSDIN 174

Query: 87  LGASTKD 93
            GAST D
Sbjct: 175 QGASTTD 181