Miyakogusa Predicted Gene

Lj3g3v1605080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1605080.1 Non Characterized Hit- tr|E9B1F9|E9B1F9_LEIMU
Putative FG-GAP repeat protein (Putative intergrin
alp,31.28,4e-19,seg,NULL,CUFF.42866.1
         (200 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g014960.1 | defective in exine formation protein | HC | ch...   369   e-102

>Medtr4g014960.1 | defective in exine formation protein | HC |
           chr4:4306393-4314896 | 20130731
          Length = 873

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/200 (86%), Positives = 182/200 (91%)

Query: 1   MVMADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKTWKMPTQGRNNVANRYNREGIYI 60
           MV+ADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLK W++P QGRNNVANRY REGIY+
Sbjct: 672 MVLADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKAWRLPNQGRNNVANRYGREGIYV 731

Query: 61  THPSRAFRDEEGKSFWVEIEIVDNYRYPSGHQGPYHVTITLLVPGNYQGERTIKQNQTYY 120
           THPSRAFRDEEGKSF+VEIEIVDNYRYPSGHQGPYHVT +LLVPGNYQGERTIKQNQTYY
Sbjct: 732 THPSRAFRDEEGKSFFVEIEIVDNYRYPSGHQGPYHVTTSLLVPGNYQGERTIKQNQTYY 791

Query: 121 QPGKHRIKLPTVGVRTSGTVLVEMVDKNGLYFYDDFSLTFHMHYYKXXXXXXXXXXXGMF 180
           QPGKHRIKLPTVGVRT+GTVLVEMVDKNGLYF D+FSLTFHMHYYK           GMF
Sbjct: 792 QPGKHRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMLGMF 851

Query: 181 GMLVILRPQESMPLPSFSRN 200
           G+LVILRPQ  +PLPSFSRN
Sbjct: 852 GVLVILRPQGPVPLPSFSRN 871