Miyakogusa Predicted Gene

Lj3g3v1603950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1603950.1 Non Characterized Hit- tr|I3SDA2|I3SDA2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.42,0,SUBFAMILY
NOT NAMED,NULL; MACHADO-JOSEPH DISEASE PROTEIN 1 (ATAXIN-3),NULL;
JOSEPHIN,Machado-Joseph ,CUFF.42849.1
         (345 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g014710.1 | ataxin-3 protein | HC | chr4:4201230-4196019 |...   506   e-143

>Medtr4g014710.1 | ataxin-3 protein | HC | chr4:4201230-4196019 |
           20130731
          Length = 331

 Score =  506 bits (1302), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/351 (76%), Positives = 290/351 (82%), Gaps = 28/351 (7%)

Query: 1   MMMEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDCKERQMMMLP- 59
           MMMEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDCKERQMMM+P 
Sbjct: 1   MMMEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDCKERQMMMMPA 60

Query: 60  -SLASGDFLSHDSHNVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFI 118
            S A+GD  SH   NVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFI
Sbjct: 61  HSSAAGDLFSH---NVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFI 117

Query: 119 CHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKGFGWSIFLVRGNFPKEF 178
           CHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKGFGWSIFLVRGNFP EF
Sbjct: 118 CHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKGFGWSIFLVRGNFPTEF 177

Query: 179 PISSSEASNGFGQWLSPEDAERIIKSCSSV-QAPQRVNN-ERQQRQDQFLSREEADMFSE 236
           PISS   SNGFGQWLSPEDAERI KSC++V QAPQ+    ERQQ  + FLSREEA+MFS+
Sbjct: 178 PISSE--SNGFGQWLSPEDAERITKSCNAVQQAPQQQRTVERQQHSNPFLSREEAEMFSD 235

Query: 237 MEDEDLKAAIAASLMDSAPAVTN-AEASSPQIGDQSSKQGATTVASPLKDQHNKTVESIE 295
           MEDEDLKAAIAASLMDS P +TN AEAS+PQ  D+               Q +  VE+IE
Sbjct: 236 MEDEDLKAAIAASLMDSTPTMTNFAEASTPQNNDK---------------QKSIQVETIE 280

Query: 296 AGVVL-SDQSNKHGASMEAASSLQIDQNNQEVASTV-GDSPQDENKNKENT 344
           A V   SD+SNKH  + EA  SL  D+NNQ+V+S++ G + Q   +NKENT
Sbjct: 281 ASVPPSSDESNKHVEATEAG-SLPNDRNNQQVSSSLGGGNSQSGIQNKENT 330