Miyakogusa Predicted Gene

Lj3g3v1591670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1591670.1 tr|G7JTF7|G7JTF7_MEDTR 2-oxoisovalerate
dehydrogenase subunit beta OS=Medicago truncatula
GN=MTR_4g0,89.47,0,Transketolase, pyrimidine binding
domain,Transketolase-like, pyrimidine-binding domain; BRANCHED
CHA,CUFF.42825.1
         (360 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g021470.1 | branched chain alpha-keto acid dehydrogenase E...   655   0.0  
Medtr7g005380.2 | pyruvate dehydrogenase E1 beta subunit | HC | ...   223   2e-58
Medtr7g005380.1 | pyruvate dehydrogenase E1 beta subunit | HC | ...   223   2e-58
Medtr3g076630.1 | pyruvate dehydrogenase E1 beta subunit | HC | ...   205   5e-53
Medtr7g009250.1 | pyruvate dehydrogenase E1 component subunit be...    57   3e-08
Medtr4g118640.3 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...    51   1e-06
Medtr4g118640.2 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...    51   1e-06
Medtr4g118640.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...    51   2e-06

>Medtr4g021470.1 | branched chain alpha-keto acid dehydrogenase E1
           beta subunit | HC | chr4:6990880-6984927 | 20130731
          Length = 358

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/361 (87%), Positives = 333/361 (92%), Gaps = 4/361 (1%)

Query: 1   MSTCVGKFRRCASLVXXXXXXXXXXXXXQKDAA-EQGLKSMNLYSAINQALHIALDSDPR 59
           MS CV +  +  SLV             QKDAA E G+KS+NLYSA+NQALHIALD+DPR
Sbjct: 1   MSPCVKRLGKWVSLVSRRGLSTSIV---QKDAAAENGVKSLNLYSAVNQALHIALDTDPR 57

Query: 60  AYVFGEDVSFGGVFRCTTGLADRFGKNRVLNTPLCEQGIIGFGIGLAAMGNRAIAEIQFA 119
           AYVFGEDV FGGVFRCTTGLADRFGK RV NTPLCEQGI+GFGIGLAAMGNRAIAEIQFA
Sbjct: 58  AYVFGEDVGFGGVFRCTTGLADRFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFA 117

Query: 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHVPGI 179
           DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIR PYGAVGHGGHYHSQSPEAFFCHVPGI
Sbjct: 118 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGI 177

Query: 180 KVVIPRSPQQAKGLLLSSIRDPNPVVFFEPKWLYRLAVEEVPEDDYMLPLSEAEVVRQGS 239
           KVVIPRSP++AKGLLLS IRDPNP+VFFEPKWLYRLAVEEVPE DYMLPLSEAEV+R+GS
Sbjct: 178 KVVIPRSPKEAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEGDYMLPLSEAEVIREGS 237

Query: 240 DITLVGWGAQLSIMEQACADAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEA 299
           DITLVGWGAQLSIMEQAC DAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLL+SHEA
Sbjct: 238 DITLVGWGAQLSIMEQACVDAEKEGISCELIDLKTLIPWDKETVEASVKKTGRLLISHEA 297

Query: 300 PITGGFGAEISASIVERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVN 359
           P+TGGFGAEISASI+ERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTV+
Sbjct: 298 PVTGGFGAEISASILERCFSRLEAPVARVCGLDTPFPLVFEPFYMPTKNKILDAIKSTVS 357

Query: 360 Y 360
           Y
Sbjct: 358 Y 358


>Medtr7g005380.2 | pyruvate dehydrogenase E1 beta subunit | HC |
           chr7:85481-92086 | 20130731
          Length = 361

 Score =  223 bits (569), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 183/324 (56%), Gaps = 7/324 (2%)

Query: 38  KSMNLYSAINQALHIALDSDPRAYVFGEDV-SFGGVFRCTTGLADRFGKNRVLNTPLCEQ 96
           K M +  A+N AL   + +DP+ ++ GE+V  + G ++ + GL +++G  RVL+TP+ E 
Sbjct: 26  KQMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 85

Query: 97  GIIGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPYG 156
           G  G G+G A  G + + E    ++   A D I+N AAK  Y S  Q N   +  R P G
Sbjct: 86  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNG 144

Query: 157 AVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPQQAKGLLLSSIRDPNPVVFFEPKWLYRLA 216
           A    G  HS    +++   PG+KV+ P S + A+GLL ++IRDP+PVVF E + LY  +
Sbjct: 145 AAAGVGAQHSHCYASWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGES 204

Query: 217 V---EEVPEDDYMLPLSEAEVVRQGSDITLVGWGAQLSIMEQACADAEKEGISCELIDLK 273
                EV +  + LP+ +A++ R+G D+T+  +   +    +A    EKEGIS E+I+L+
Sbjct: 205 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMVGFALKAAETLEKEGISAEVINLR 264

Query: 274 TLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEISASIVERCFSRLEAPVARVCGLDT 333
           ++ P D+ T+ ASV+KT RL+   E     G GAEI AS++E  F  L+APV R+ G D 
Sbjct: 265 SIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV 324

Query: 334 PFPLV--FEPFYMPTKNKILDAIK 355
           P P     E   +P    I+ A K
Sbjct: 325 PMPYAANLERLAVPQIEDIVRAAK 348


>Medtr7g005380.1 | pyruvate dehydrogenase E1 beta subunit | HC |
           chr7:86084-92086 | 20130731
          Length = 361

 Score =  223 bits (569), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 183/324 (56%), Gaps = 7/324 (2%)

Query: 38  KSMNLYSAINQALHIALDSDPRAYVFGEDV-SFGGVFRCTTGLADRFGKNRVLNTPLCEQ 96
           K M +  A+N AL   + +DP+ ++ GE+V  + G ++ + GL +++G  RVL+TP+ E 
Sbjct: 26  KQMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 85

Query: 97  GIIGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPYG 156
           G  G G+G A  G + + E    ++   A D I+N AAK  Y S  Q N   +  R P G
Sbjct: 86  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNG 144

Query: 157 AVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPQQAKGLLLSSIRDPNPVVFFEPKWLYRLA 216
           A    G  HS    +++   PG+KV+ P S + A+GLL ++IRDP+PVVF E + LY  +
Sbjct: 145 AAAGVGAQHSHCYASWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGES 204

Query: 217 V---EEVPEDDYMLPLSEAEVVRQGSDITLVGWGAQLSIMEQACADAEKEGISCELIDLK 273
                EV +  + LP+ +A++ R+G D+T+  +   +    +A    EKEGIS E+I+L+
Sbjct: 205 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMVGFALKAAETLEKEGISAEVINLR 264

Query: 274 TLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEISASIVERCFSRLEAPVARVCGLDT 333
           ++ P D+ T+ ASV+KT RL+   E     G GAEI AS++E  F  L+APV R+ G D 
Sbjct: 265 SIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV 324

Query: 334 PFPLV--FEPFYMPTKNKILDAIK 355
           P P     E   +P    I+ A K
Sbjct: 325 PMPYAANLERLAVPQIEDIVRAAK 348


>Medtr3g076630.1 | pyruvate dehydrogenase E1 beta subunit | HC |
           chr3:34442945-34446106 | 20130731
          Length = 403

 Score =  205 bits (522), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 167/296 (56%), Gaps = 3/296 (1%)

Query: 42  LYSAINQALHIALDSDPRAYVFGEDVS-FGGVFRCTTGLADRFGKNRVLNTPLCEQGIIG 100
           L+ A+ + L   ++ DP   V GEDV  +GG ++ T  LA++FG  RVL+TP+ E    G
Sbjct: 85  LFEALREGLEEEMERDPCVCVMGEDVGHYGGSYKVTRNLAEKFGDLRVLDTPIAENAFTG 144

Query: 101 FGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGH 160
            GIG A  G R I E     ++  AF+QI N      Y SG QF    + IR P G    
Sbjct: 145 MGIGAAMTGLRPIIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIP-VVIRGPGGVGRQ 203

Query: 161 GGHYHSQSPEAFFCHVPGIKVVIPRSPQQAKGLLLSSIRDPNPVVFFEPKWLYRLAVEEV 220
            G  HSQ  E++F  +PGI++V   +P  AKGL+ ++IR  NPV+ FE   LY L  E +
Sbjct: 204 LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSDNPVILFEHVLLYNLK-ERI 262

Query: 221 PEDDYMLPLSEAEVVRQGSDITLVGWGAQLSIMEQACADAEKEGISCELIDLKTLIPWDK 280
           P+++Y+L L EAE+VR G  +T++ +      + QA      +G   E+ID+++L P+D 
Sbjct: 263 PDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 322

Query: 281 ETVEASVKKTGRLLVSHEAPITGGFGAEISASIVERCFSRLEAPVARVCGLDTPFP 336
            T+  S+KKT R+L+  E   TGG GA ++A+I E     L+AP+  +   D P P
Sbjct: 323 HTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIICLSSQDVPTP 378


>Medtr7g009250.1 | pyruvate dehydrogenase E1 component subunit beta
           | HC | chr7:1979798-1980901 | 20130731
          Length = 117

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 151 IRAPYGAVGHGGHYHSQSPE-AFFCHVPGIKVVIPRSPQQAKGLLLSSIRDPNPVVFFEP 209
           + A +  +G G  Y+   P   F      ++    +  + A+GLL ++IRDP+PVVF E 
Sbjct: 5   VMAGFTRIGVGAAYYGLKPVLEFMTFNFSMQTRCNKFSEDARGLLKAAIRDPDPVVFLEN 64

Query: 210 KWLYR---LAVEEVPEDDYMLPLSEAEVVRQGSDITLVGWGAQLSIMEQAC 257
           + LY    L   EV +  + LP+ +A++ ++G D T+  +   +    + C
Sbjct: 65  ELLYGESFLVSAEVLDSSFCLPIGKAKIEKEGKDATITAFSKMVGFALKGC 115


>Medtr4g118640.3 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr4:49145064-49148819 | 20130731
          Length = 678

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 86  NRVLNTPLCEQGIIGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFN 145
            R  +  + EQ  + F  GLA  G +    I ++ ++  A+DQ+V++    +       +
Sbjct: 438 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFLQRAYDQVVHDVDLQKLPVRFAMD 496

Query: 146 CGGLTIRAPYGAVGHGGHYHSQSPE-AFFCHVPGIKVVIPRSPQQAKGLLLSSIR-DPNP 203
             GL        VG  G  HS S +  F   +P + V+ P    +   ++ ++   D  P
Sbjct: 497 RAGL--------VGSDGPTHSGSFDVTFMACLPNMVVMAPSDEAELCHMVATAAAIDDRP 548

Query: 204 VVFFEPKWLYRLAVEEVPEDDYMLPLS--EAEVVRQGSDITLVGWGAQLSIMEQACADAE 261
             F  P+    + VE +P +   +PL   +  ++ +G  + L+G+G+ +     A +  E
Sbjct: 549 SCFRYPRG-NGIGVE-LPTEYKGIPLEIGKGRILIEGERVALLGYGSAVQNCLAAASLVE 606

Query: 262 KEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEIS 310
           + G+   + D +   P D+  +  S+ K+  +L++ E    GGFG+ ++
Sbjct: 607 QHGLRLTVADARFCKPLDRSLIR-SLAKSHEVLITVEEGSIGGFGSHVA 654


>Medtr4g118640.2 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr4:49145064-49149332 | 20130731
          Length = 672

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 86  NRVLNTPLCEQGIIGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFN 145
            R  +  + EQ  + F  GLA  G +    I ++ ++  A+DQ+V++    +       +
Sbjct: 393 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFLQRAYDQVVHDVDLQKLPVRFAMD 451

Query: 146 CGGLTIRAPYGAVGHGGHYHSQSPE-AFFCHVPGIKVVIPRSPQQAKGLLLSSIR-DPNP 203
             GL        VG  G  HS S +  F   +P + V+ P    +   ++ ++   D  P
Sbjct: 452 RAGL--------VGSDGPTHSGSFDVTFMACLPNMVVMAPSDEAELCHMVATAAAIDDRP 503

Query: 204 VVFFEPKWLYRLAVEEVPEDDYMLPLS--EAEVVRQGSDITLVGWGAQLSIMEQACADAE 261
             F  P+    + VE +P +   +PL   +  ++ +G  + L+G+G+ +     A +  E
Sbjct: 504 SCFRYPRG-NGIGVE-LPTEYKGIPLEIGKGRILIEGERVALLGYGSAVQNCLAAASLVE 561

Query: 262 KEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEIS 310
           + G+   + D +   P D+  +  S+ K+  +L++ E    GGFG+ ++
Sbjct: 562 QHGLRLTVADARFCKPLDRSLIR-SLAKSHEVLITVEEGSIGGFGSHVA 609


>Medtr4g118640.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr4:49145064-49149426 | 20130731
          Length = 717

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 86  NRVLNTPLCEQGIIGFGIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFN 145
            R  +  + EQ  + F  GLA  G +    I ++ ++  A+DQ+V++    +       +
Sbjct: 438 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFLQRAYDQVVHDVDLQKLPVRFAMD 496

Query: 146 CGGLTIRAPYGAVGHGGHYHSQSPE-AFFCHVPGIKVVIPRSPQQAKGLLLSSIR-DPNP 203
             GL        VG  G  HS S +  F   +P + V+ P    +   ++ ++   D  P
Sbjct: 497 RAGL--------VGSDGPTHSGSFDVTFMACLPNMVVMAPSDEAELCHMVATAAAIDDRP 548

Query: 204 VVFFEPKWLYRLAVEEVPEDDYMLPLS--EAEVVRQGSDITLVGWGAQLSIMEQACADAE 261
             F  P+    + VE +P +   +PL   +  ++ +G  + L+G+G+ +     A +  E
Sbjct: 549 SCFRYPRG-NGIGVE-LPTEYKGIPLEIGKGRILIEGERVALLGYGSAVQNCLAAASLVE 606

Query: 262 KEGISCELIDLKTLIPWDKETVEASVKKTGRLLVSHEAPITGGFGAEIS 310
           + G+   + D +   P D+  +  S+ K+  +L++ E    GGFG+ ++
Sbjct: 607 QHGLRLTVADARFCKPLDRSLIR-SLAKSHEVLITVEEGSIGGFGSHVA 654