Miyakogusa Predicted Gene

Lj3g3v1556590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1556590.1 tr|B9I081|B9I081_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_569063 PE=4
SV=1,55.84,0.00000000000001,Oxygen-evolving enhancer protein
3,,PsbQ-like domain; PsbQ,Photosystem II PsbQ, oxygen evolving
comp,CUFF.42793.1
         (245 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g082580.1 | oxygen-evolving enhancer protein | HC | chr2:3...   372   e-103
Medtr8g005175.1 | oxygen-evolving enhancer protein | HC | chr8:8...    63   3e-10
Medtr5g041910.1 | oxygen-evolving enhancer protein | HC | chr5:1...    61   9e-10
Medtr8g005175.2 | oxygen-evolving enhancer protein | HC | chr8:8...    55   7e-08

>Medtr2g082580.1 | oxygen-evolving enhancer protein | HC |
           chr2:34656157-34654413 | 20130731
          Length = 230

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/230 (77%), Positives = 202/230 (87%), Gaps = 4/230 (1%)

Query: 20  MAPLTNLHGVSKNLTPITCL-PNVHRTLRRGHVV-GFLGRKSQEFSEC-SVQSTRRAAAI 76
           MAPLTNLHGVSK LTPITCL PN  RT + G VV GFLG K+++ SEC SV +TRRAAAI
Sbjct: 1   MAPLTNLHGVSKTLTPITCLVPNAQRTFKTGQVVVGFLGSKTKKISECESVNTTRRAAAI 60

Query: 77  SFASLLLTGQFKDNVSLA-DNGFWIDGPLPEPIVINKIANEKTGTRSFLKKRLYMANIGV 135
           S  SL+LTGQF + +SLA DNGFWIDGP+PEP V N IANEKTGTRSF+KK+LYMANIG 
Sbjct: 61  SLVSLVLTGQFSEKISLAKDNGFWIDGPIPEPTVTNNIANEKTGTRSFIKKKLYMANIGA 120

Query: 136 KGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISATPVDEKQQLT 195
           KGSV RIKKYAFDLLAMADL+ +DTLNYVRRYLRLKSTFMY DFDKVISA PV++KQQLT
Sbjct: 121 KGSVLRIKKYAFDLLAMADLIAQDTLNYVRRYLRLKSTFMYFDFDKVISAVPVEDKQQLT 180

Query: 196 DMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRMTAMYKTI 245
           D+ANKLFDNFEKLEEASR KNL ET++CY+E+E++LK+VMDRMT MYKTI
Sbjct: 181 DVANKLFDNFEKLEEASRNKNLLETQACYKETEVMLKDVMDRMTIMYKTI 230


>Medtr8g005175.1 | oxygen-evolving enhancer protein | HC |
           chr8:83317-85681 | 20130731
          Length = 232

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 90/175 (51%), Gaps = 6/175 (3%)

Query: 68  QSTRRAAAISFASLLLTGQFKDNVSLADNGFWIDGP-LPE---PIVINKIANEKTGTRSF 123
           +S+RRA     A+ L++  F   V        + GP  P    P  +N  ++E    +  
Sbjct: 59  ESSRRAVIGLVATGLVSSSFVQAVLAEAIPIKVGGPPAPSGGLPGTLN--SDEARDLKLP 116

Query: 124 LKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVI 183
           LK+R Y+  +    +  R K+ A +++A    + +    Y++  LRL++ ++ +D + +I
Sbjct: 117 LKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTII 176

Query: 184 SATPVDEKQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
           SA P D+K+ L ++  KLF + + L+ A++ K+ S+ +  Y  +   L +V+ ++
Sbjct: 177 SAKPKDQKKSLKELTGKLFQDIDNLDYAAKVKSPSDAEKYYAIAVSTLNDVLSKI 231


>Medtr5g041910.1 | oxygen-evolving enhancer protein | HC |
           chr5:18404095-18401663 | 20130731
          Length = 261

 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 60/109 (55%)

Query: 119 GTRSFLKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHD 178
           GTRSF+K+  +M  +  + +V RIK+ A  L  + ++++  +  YV  Y+RLK  ++  D
Sbjct: 141 GTRSFMKEHFFMPGLSPEDAVLRIKQTAEGLHNLREMLETLSWRYVMFYIRLKQNYLEQD 200

Query: 179 FDKVISATPVDEKQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQES 227
               I+  P + +++    AN+L DN  +++   R   + E+   Y+++
Sbjct: 201 LRNAITTLPENRRKEYVKTANELVDNLTEMDRYVRTPKVYESYLYYEKT 249


>Medtr8g005175.2 | oxygen-evolving enhancer protein | HC |
           chr8:83599-85681 | 20130731
          Length = 266

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 6/145 (4%)

Query: 68  QSTRRAAAISFASLLLTGQFKDNVSLADNGFWIDGP-LPE---PIVINKIANEKTGTRSF 123
           +S+RRA     A+ L++  F   V        + GP  P    P  +N  ++E    +  
Sbjct: 59  ESSRRAVIGLVATGLVSSSFVQAVLAEAIPIKVGGPPAPSGGLPGTLN--SDEARDLKLP 116

Query: 124 LKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVI 183
           LK+R Y+  +    +  R K+ A +++A    + +    Y++  LRL++ ++ +D + +I
Sbjct: 117 LKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTII 176

Query: 184 SATPVDEKQQLTDMANKLFDNFEKL 208
           SA P D+K+ L ++  KLF + + +
Sbjct: 177 SAKPKDQKKSLKELTGKLFQDIDNV 201