Miyakogusa Predicted Gene
- Lj3g3v1545570.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1545570.1 tr|B7FHX6|B7FHX6_MEDTR Transcription factor ILR3
OS=Medicago truncatula GN=MTR_2g082640 PE=2
SV=1,76.79,0,coiled-coil,NULL; no description,Helix-loop-helix domain;
helix loop helix domain,Helix-loop-helix d,CUFF.42791.1
(236 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g082640.1 | BHLH domain class transcription factor | HC | ... 351 4e-97
Medtr4g081370.1 | BHLH domain class transcription factor | HC | ... 342 2e-94
Medtr4g081370.2 | BHLH domain class transcription factor | HC | ... 300 1e-81
Medtr2g089000.1 | BHLH domain class transcription factor | HC | ... 213 9e-56
Medtr1g043430.1 | BHLH domain class transcription factor | HC | ... 195 2e-50
Medtr4g075480.2 | transcription factor | HC | chr4:28837847-2884... 97 2e-20
Medtr4g075480.1 | transcription factor | HC | chr4:28837847-2884... 97 2e-20
Medtr4g075480.3 | transcription factor | HC | chr4:28837847-2884... 96 2e-20
Medtr1g032600.1 | transcription factor | HC | chr1:11621022-1162... 91 1e-18
Medtr1g032600.2 | transcription factor | HC | chr1:11621022-1162... 91 1e-18
Medtr4g108360.1 | BHLH transcription factor | HC | chr4:44950290... 72 5e-13
Medtr4g108360.2 | BHLH transcription factor | HC | chr4:44950596... 51 8e-07
>Medtr2g082640.1 | BHLH domain class transcription factor | HC |
chr2:34669163-34671763 | 20130731
Length = 230
Score = 351 bits (900), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 182/237 (76%), Positives = 197/237 (83%), Gaps = 8/237 (3%)
Query: 1 MVSAENTNWLFDYGLIDDDIPGSDGSFTLSASAFNWPPPPQPSNVGVEID-GSLGDFDGL 59
MVS ENTNWLFDY LID+ DGSF AF WPPP SN G+E+D SL D DG+
Sbjct: 1 MVSPENTNWLFDYPLIDEIPVSVDGSF-----AFTWPPP-HLSNGGIEMDDSSLVDSDGI 54
Query: 60 KDPGVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAV 119
K+PG KKRGR+DSCAPSSSKACREKLRRD+LNDKFVELGSILEPGRPPKTDKAAILIDAV
Sbjct: 55 KEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAV 114
Query: 120 RVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQQP 179
R+VTQLRGEAQ LKDSN+ LQEKIKELK EKNELRDEKQRLKAEKEKLEQQVK MN QP
Sbjct: 115 RMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNT-QP 173
Query: 180 GFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA 236
GFL PP IPAAF+ GQAP +K +P+ +PGVAMWQF+P AAVDTSQDH LRPP A
Sbjct: 174 GFLTHPPAIPAAFAHQGQAPSNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA 230
>Medtr4g081370.1 | BHLH domain class transcription factor | HC |
chr4:31541350-31537381 | 20130731
Length = 237
Score = 342 bits (877), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 174/239 (72%), Positives = 194/239 (81%), Gaps = 5/239 (2%)
Query: 1 MVSAENTNWLFDYGLIDDDIPGSDGSFTLSASAFNWPPPP---QPSNVGVEIDGSLGDFD 57
MVS ENTNW+ DYG DD IP D +F L +SAF WP P SNV E+DGSLGD D
Sbjct: 1 MVSRENTNWINDYGFYDD-IPVPDSTFALPSSAFTWPTQPPFNLSSNVSAEVDGSLGDSD 59
Query: 58 GLKDPGVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILID 117
GLK+ G KKR R++SCA +SSKACREKLRRD+LNDKF+ELGSILEPGRP KTDKAAILID
Sbjct: 60 GLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILID 119
Query: 118 AVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQ 177
AVR+VTQLRGEAQ LKD+N+ LQEKIKELK EKNELRDEKQRLKAEKEKLEQQ+K MN
Sbjct: 120 AVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNA- 178
Query: 178 QPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA 236
P FLP P +PAAF+A GQA G+K VP+ +PGVAMWQF+P AAVDTSQDH LRPP A
Sbjct: 179 PPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237
>Medtr4g081370.2 | BHLH domain class transcription factor | HC |
chr4:31541177-31537807 | 20130731
Length = 193
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/192 (77%), Positives = 166/192 (86%), Gaps = 1/192 (0%)
Query: 45 VGVEIDGSLGDFDGLKDPGVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPG 104
+G E+DGSLGD DGLK+ G KKR R++SCA +SSKACREKLRRD+LNDKF+ELGSILEPG
Sbjct: 3 MGAEVDGSLGDSDGLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPG 62
Query: 105 RPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEK 164
RP KTDKAAILIDAVR+VTQLRGEAQ LKD+N+ LQEKIKELK EKNELRDEKQRLKAEK
Sbjct: 63 RPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEK 122
Query: 165 EKLEQQVKLMNVQQPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAAVD 224
EKLEQQ+K MN P FLP P +PAAF+A GQA G+K VP+ +PGVAMWQF+P AAVD
Sbjct: 123 EKLEQQLKSMNA-PPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVD 181
Query: 225 TSQDHQLRPPAA 236
TSQDH LRPP A
Sbjct: 182 TSQDHVLRPPVA 193
>Medtr2g089000.1 | BHLH domain class transcription factor | HC |
chr2:37541705-37539428 | 20130731
Length = 260
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 130/259 (50%), Positives = 157/259 (60%), Gaps = 41/259 (15%)
Query: 9 WLFDYGLIDDDIPGSDGSFTLSAS-----AFNWPPPPQP---------SNVGVEIDGSLG 54
WL+DYG DDI S F S S F W P PQ S++ +E+D SL
Sbjct: 12 WLYDYGY--DDISISAADFMASDSSAAASTFTWMPQPQSQTQIINPPSSHMSLEMDYSLD 69
Query: 55 DFDGLKDP-----------------GVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVEL 97
+P G KR RT+S A SSSKA REK+RRDKLND+F+EL
Sbjct: 70 STVMESNPSKRMEMEYSLDSTVLENGPSKRLRTESYA-SSSKAGREKVRRDKLNDRFMEL 128
Query: 98 GSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEK 157
S+LEP PKTDK ++L DAVRVVTQLR EA+ LK+ N L+EK+KELKAEK ELRDEK
Sbjct: 129 SSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKKELRDEK 188
Query: 158 QRLKAEKEKLEQQVKLMNVQQPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQF 217
+LK +KEKLEQQVKL +VQ FL A +A GQ K +P+ +PG++MWQF
Sbjct: 189 NKLKLDKEKLEQQVKLASVQS-NFL------SNAMAAKGQTANHKLMPFIGYPGISMWQF 241
Query: 218 LPSAAVDTSQDHQLRPPAA 236
+ A VDTSQDH LRPP A
Sbjct: 242 MSPATVDTSQDHLLRPPVA 260
>Medtr1g043430.1 | BHLH domain class transcription factor | HC |
chr1:16308113-16312292 | 20130731
Length = 246
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 143/216 (66%), Gaps = 7/216 (3%)
Query: 21 PGSDGSFTLSASAFNWPPPPQPSNVGVEIDGSLGDFDGLKDPGVKKRGRTDSCAPSSSKA 80
P F +S++ +V E D G ++ +KRGRT+SC + +KA
Sbjct: 38 PSVSTEFDISSNVVACQEENTRKSVSTETDIPSGAV-VCQEENTRKRGRTESCYKAGTKA 96
Query: 81 CREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQ 140
CREKLRR+KLN++F +L ++LEPGRP +TDK AIL DA+RV++QL+ EAQ LK+SN L
Sbjct: 97 CREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKESNEKLL 156
Query: 141 EKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQQPGFLPAPPTIPAAFSALGQAPG 200
E+IK LKAEKNELR+EK LKA+KEK+E+Q+K M V GF+P PP AA+ QA
Sbjct: 157 EEIKCLKAEKNELREEKLVLKADKEKIEKQLKSMPVSPAGFMPPPPM--AAY----QASV 210
Query: 201 SKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA 236
+K Y + + MW +LP +A DTSQDH+LRPPAA
Sbjct: 211 NKMAVYPNYGYIPMWHYLPQSARDTSQDHELRPPAA 246
>Medtr4g075480.2 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 282
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 12/150 (8%)
Query: 74 APSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLK 133
A + KA REKLRRD+LN++F+ELG+IL+P RP K DKA IL D V+++ L + LK
Sbjct: 6 ARKTQKADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLK 64
Query: 134 DSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKL-MNVQQP------GFLPAPP 186
D T L E+ +EL EKN+LR+EK LK++ E L Q +L + P + APP
Sbjct: 65 DEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPP 124
Query: 187 TIPAAFSALGQAPGSKFVPYGY----HPGV 212
+ P A PY Y HP V
Sbjct: 125 SYPYPVPMPVPAGSIPMQPYPYYANQHPAV 154
>Medtr4g075480.1 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 282
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 12/150 (8%)
Query: 74 APSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLK 133
A + KA REKLRRD+LN++F+ELG+IL+P RP K DKA IL D V+++ L + LK
Sbjct: 6 ARKTQKADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLK 64
Query: 134 DSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKL-MNVQQP------GFLPAPP 186
D T L E+ +EL EKN+LR+EK LK++ E L Q +L + P + APP
Sbjct: 65 DEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPP 124
Query: 187 TIPAAFSALGQAPGSKFVPYGY----HPGV 212
+ P A PY Y HP V
Sbjct: 125 SYPYPVPMPVPAGSIPMQPYPYYANQHPAV 154
>Medtr4g075480.3 | transcription factor | HC |
chr4:28837847-28840939 | 20130731
Length = 310
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 12/150 (8%)
Query: 74 APSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLK 133
A + KA REKLRRD+LN++F+ELG+IL+P RP K DKA IL D V+++ L + LK
Sbjct: 34 ARKTQKADREKLRRDRLNEQFLELGNILDPDRP-KNDKATILGDTVQLLKDLSSQVSKLK 92
Query: 134 DSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKL-MNVQQP------GFLPAPP 186
D T L E+ +EL EKN+LR+EK LK++ E L Q +L + P + APP
Sbjct: 93 DEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPP 152
Query: 187 TIPAAFSALGQAPGSKFVPYGY----HPGV 212
+ P A PY Y HP V
Sbjct: 153 SYPYPVPMPVPAGSIPMQPYPYYANQHPAV 182
>Medtr1g032600.1 | transcription factor | HC |
chr1:11621022-11623661 | 20130731
Length = 355
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 15/156 (9%)
Query: 36 WPPPPQPSNVGVEIDGSLGDFDGLKDPGVKKRGRTDSC--------APSSSKACREKLRR 87
W PPP P N SL D P +R R++ A KA REK+RR
Sbjct: 33 WKPPPPPLNTSK--TPSLTAEDSPPLPITNRRERSEMVEVGDPTVVARKVQKADREKIRR 90
Query: 88 DKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQEKIKELK 147
D+LND F +LG++++P RP + DKA I+ + ++V+ + E LK + SL E+ +EL
Sbjct: 91 DRLNDHFHQLGTVIDPDRP-RNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESRELI 149
Query: 148 AEKNELRDEKQRLKAEKEKLEQQVKLMNVQQPGFLP 183
EK ELR+EK LK++ E L Q + Q+ G +P
Sbjct: 150 QEKTELREEKASLKSDIENLNSQYQ----QRVGVMP 181
>Medtr1g032600.2 | transcription factor | HC |
chr1:11621022-11623661 | 20130731
Length = 355
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 15/156 (9%)
Query: 36 WPPPPQPSNVGVEIDGSLGDFDGLKDPGVKKRGRTDSC--------APSSSKACREKLRR 87
W PPP P N SL D P +R R++ A KA REK+RR
Sbjct: 33 WKPPPPPLNTSK--TPSLTAEDSPPLPITNRRERSEMVEVGDPTVVARKVQKADREKIRR 90
Query: 88 DKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQEKIKELK 147
D+LND F +LG++++P RP + DKA I+ + ++V+ + E LK + SL E+ +EL
Sbjct: 91 DRLNDHFHQLGTVIDPDRP-RNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESRELI 149
Query: 148 AEKNELRDEKQRLKAEKEKLEQQVKLMNVQQPGFLP 183
EK ELR+EK LK++ E L Q + Q+ G +P
Sbjct: 150 QEKTELREEKASLKSDIENLNSQYQ----QRVGVMP 181
>Medtr4g108360.1 | BHLH transcription factor | HC |
chr4:44950290-44948517 | 20130731
Length = 246
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 61 DPGVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVR 120
DPG K+G+ KA REK++R+ LN+ F++L + L+ P KA+ILI+A R
Sbjct: 40 DPGTMKQGKVPKRI---HKAEREKMKREHLNELFLDLANALDLSEP-NNGKASILIEASR 95
Query: 121 VVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQQPG 180
++ L + Q+LK N SL + + EKNEL++E L+ + EKL+ +++ Q
Sbjct: 96 LLKDLLCQIQSLKKENVSLLSESHYVTMEKNELKEENSSLETQIEKLQGEIQARIAQSKP 155
Query: 181 FLPAPPTI 188
L APP +
Sbjct: 156 DLNAPPQL 163
>Medtr4g108360.2 | BHLH transcription factor | HC |
chr4:44950596-44948167 | 20130731
Length = 193
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 107 PKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEK 166
P KA+ILI+A R++ L + Q+LK N SL + + EKNEL++E L+ + EK
Sbjct: 29 PNNGKASILIEASRLLKDLLCQIQSLKKENVSLLSESHYVTMEKNELKEENSSLETQIEK 88
Query: 167 LEQQVKLMNVQQPGFLPAPPTI 188
L+ +++ Q L APP +
Sbjct: 89 LQGEIQARIAQSKPDLNAPPQL 110