Miyakogusa Predicted Gene

Lj3g3v1541430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1541430.1 Non Characterized Hit- tr|F6I1L4|F6I1L4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,65.62,2e-18,seg,NULL; PRE-MRNA CLEAVAGE COMPLEX
II,NULL,NODE_22172_length_1694_cov_64.429161.path2.1
         (538 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g011450.1 | PCF11P-related protein | HC | chr6:3246456-325...   271   2e-72
Medtr6g011450.2 | PCF11P-related protein | HC | chr6:3248562-325...   270   4e-72
Medtr4g073340.1 | hypothetical protein | HC | chr4:27754923-2775...   221   2e-57
Medtr6g011470.1 | PCF11P-related protein | HC | chr6:3262423-326...    78   2e-14

>Medtr6g011450.1 | PCF11P-related protein | HC |
           chr6:3246456-3252804 | 20130731
          Length = 840

 Score =  271 bits (692), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/177 (75%), Positives = 148/177 (83%), Gaps = 1/177 (0%)

Query: 3   LSTYADEYPADNSTGRTIERESPHHAVDYGVVKTLGREEELSEWQRKQFSGDSRKRFQT- 61
           + +Y DEY ADNSTGRT+ERESPHHAVDYG+VK LGREEE SEW RK FSGDSRKRFQT 
Sbjct: 256 MPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEESSEWSRKPFSGDSRKRFQTS 315

Query: 62  MTYSLSNGQQRQSPRALIDAYGSDKSQETSSSKPFLVKRLGRNGIDKVSTTSWQNTEEEE 121
           MTYSLSNGQ RQ+PRALIDAYGSDKSQETS SKP LV+RL RNG+DKV TTSWQNTEEEE
Sbjct: 316 MTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEE 375

Query: 122 FDWEDMSPTLVEHNRNNGFLQSTTGFTTEMPVTVAANAISSEQDTRTGWSSGSQLLP 178
           FDWEDMSPT+V+H R+NGFLQ T GF++E PVTVAANA SS      G +S  +  P
Sbjct: 376 FDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRVFPGLNSNIEYRP 432



 Score =  264 bits (675), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 173/283 (61%), Gaps = 9/283 (3%)

Query: 264 ARLAASRMLPGLKSNVEGGPPPVLPATFEMRPSVNVHAARPPSLNPAFQFKNNVR--FES 321
           A  + SR+ PGL SN+E  PP VLPA FE R SVNVHA RPPS+ P F  KN VR  FES
Sbjct: 413 ATSSVSRVFPGLNSNIEYRPP-VLPAAFETRHSVNVHAPRPPSITPIFPSKNPVRNPFES 471

Query: 322 IXXXXXXXXXXXXXXLL-MREQSLYNVEDKDFSKGNLYQLPNQQSGLVSSNPQNRGQAPQ 380
           I                 M EQSL+ VE+ D +K NLYQLPNQ  GL+SSNP N  Q P 
Sbjct: 472 INANSTIVSHGLINRPFPMHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPS 531

Query: 381 LQFFPSQDPAAXXXXXXXXXXXXX-ARNTHLSNAPPNMPFPLPGQNMVNNSLHFLGGXXX 439
            QFFP QDPAA              A +  L N  P MP PLPGQ + NNS HF GG   
Sbjct: 532 FQFFPPQDPAASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALR 591

Query: 440 XXXXXXXXXXXXX----XXXXXVSSQRPTVPYSNLFSSLVAQGVISFPNQAPAQDSVGIE 495
                                 V +Q+PTV YSNL +SL+AQGVIS  NQAP+QD VGIE
Sbjct: 592 PLPPPGPHAPSQMPPHPNPSPFVPNQQPTVGYSNLINSLMAQGVISLTNQAPSQDFVGIE 651

Query: 496 FNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
           F+ D LKVRHESAISALYG+LPRQCTTCGLRFK QDEHS+HMD
Sbjct: 652 FDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMD 694


>Medtr6g011450.2 | PCF11P-related protein | HC |
           chr6:3248562-3252804 | 20130731
          Length = 702

 Score =  270 bits (689), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/177 (75%), Positives = 148/177 (83%), Gaps = 1/177 (0%)

Query: 3   LSTYADEYPADNSTGRTIERESPHHAVDYGVVKTLGREEELSEWQRKQFSGDSRKRFQT- 61
           + +Y DEY ADNSTGRT+ERESPHHAVDYG+VK LGREEE SEW RK FSGDSRKRFQT 
Sbjct: 118 MPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEESSEWSRKPFSGDSRKRFQTS 177

Query: 62  MTYSLSNGQQRQSPRALIDAYGSDKSQETSSSKPFLVKRLGRNGIDKVSTTSWQNTEEEE 121
           MTYSLSNGQ RQ+PRALIDAYGSDKSQETS SKP LV+RL RNG+DKV TTSWQNTEEEE
Sbjct: 178 MTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEE 237

Query: 122 FDWEDMSPTLVEHNRNNGFLQSTTGFTTEMPVTVAANAISSEQDTRTGWSSGSQLLP 178
           FDWEDMSPT+V+H R+NGFLQ T GF++E PVTVAANA SS      G +S  +  P
Sbjct: 238 FDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPVTVAANATSSVSRVFPGLNSNIEYRP 294



 Score =  264 bits (674), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 173/283 (61%), Gaps = 9/283 (3%)

Query: 264 ARLAASRMLPGLKSNVEGGPPPVLPATFEMRPSVNVHAARPPSLNPAFQFKNNVR--FES 321
           A  + SR+ PGL SN+E  PP VLPA FE R SVNVHA RPPS+ P F  KN VR  FES
Sbjct: 275 ATSSVSRVFPGLNSNIEYRPP-VLPAAFETRHSVNVHAPRPPSITPIFPSKNPVRNPFES 333

Query: 322 IXXXXXXXXXXXXXXLL-MREQSLYNVEDKDFSKGNLYQLPNQQSGLVSSNPQNRGQAPQ 380
           I                 M EQSL+ VE+ D +K NLYQLPNQ  GL+SSNP N  Q P 
Sbjct: 334 INANSTIVSHGLINRPFPMHEQSLHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPS 393

Query: 381 LQFFPSQDPAAXX-XXXXXXXXXXXARNTHLSNAPPNMPFPLPGQNMVNNSLHFLGGXXX 439
            QFFP QDPAA              A +  L N  P MP PLPGQ + NNS HF GG   
Sbjct: 394 FQFFPPQDPAASQFTYRPSLPGHGPAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALR 453

Query: 440 XXXXXXXXXXXXX----XXXXXVSSQRPTVPYSNLFSSLVAQGVISFPNQAPAQDSVGIE 495
                                 V +Q+PTV YSNL +SL+AQGVIS  NQAP+QD VGIE
Sbjct: 454 PLPPPGPHAPSQMPPHPNPSPFVPNQQPTVGYSNLINSLMAQGVISLTNQAPSQDFVGIE 513

Query: 496 FNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
           F+ D LKVRHESAISALYG+LPRQCTTCGLRFK QDEHS+HMD
Sbjct: 514 FDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMD 556


>Medtr4g073340.1 | hypothetical protein | HC |
           chr4:27754923-27752645 | 20130731
          Length = 521

 Score =  221 bits (562), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/281 (48%), Positives = 158/281 (56%), Gaps = 29/281 (10%)

Query: 258 DVNSYGARLAASRMLPGLKSNVEGGPPPVLPATFEMRPSVNVHAARPPSLNPAFQFKNNV 317
           D+ +  A  + SR  PGL SN+E GPP VLPATFEMR S+NVHA  PPS+ P F  K   
Sbjct: 124 DIVAASATSSVSREFPGLNSNIEYGPP-VLPATFEMRHSINVHAPHPPSITPIFPSK--- 179

Query: 318 RFESIXXXXXXXXXXXXXXLLMREQSLYNVEDKDFSKGNLYQLPNQQSGLVSSNPQNRGQ 377
                              +L      + VE+ D SK NL+QLPNQ  G +SSNP N GQ
Sbjct: 180 -------------------ILPFPLHEHGVENNDISKRNLHQLPNQLPGPISSNPHNSGQ 220

Query: 378 APQLQFFPSQDPAAXXXXXXXXXXXXXARNTHLSNAPPNMPFPLPGQNMVNNSLHFLGGX 437
            P  QFFPSQ+P A             A    +SN   N  F +P   + +     L   
Sbjct: 221 MPPFQFFPSQNPPASQFTYKTSLPGHGAA---ISNPSQNAQFVMP---LPSFQGGALPPL 274

Query: 438 XXXXXXXXXXXXXXXXXXXXVSSQRPTVPYSNLFSSLVAQGVISFPNQAPAQDSVGIEFN 497
                               VSSQ+PTV YSNLF SL+AQGVIS  NQAPAQD VGIEF+
Sbjct: 275 PPAGPYTLLQIPPNPNPCPSVSSQQPTVGYSNLFGSLMAQGVISLTNQAPAQDFVGIEFD 334

Query: 498 LDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
            + LKVRHESAISALYGDLPRQCTTCGLRFK QDEH +HMD
Sbjct: 335 PNTLKVRHESAISALYGDLPRQCTTCGLRFKSQDEHRSHMD 375



 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 88/113 (77%), Gaps = 4/113 (3%)

Query: 51  FSGDSRKR-FQTMTYSLSNGQQRQSPRALIDAYGSDKSQETSSSKPFLVKRLGRNGIDKV 109
            S  +RKR F  ++Y     Q RQ+PRALIDAYGSDKSQETS SKP LV+RL +NG DKV
Sbjct: 24  ISNITRKRCFDELSYLR---QPRQNPRALIDAYGSDKSQETSGSKPLLVERLDKNGKDKV 80

Query: 110 STTSWQNTEEEEFDWEDMSPTLVEHNRNNGFLQSTTGFTTEMPVTVAANAISS 162
            TTSWQNTEEEEFDWEDMSPTL + +R+NGFLQ T GF++E P  VAA+A SS
Sbjct: 81  MTTSWQNTEEEEFDWEDMSPTLEDRSRSNGFLQPTIGFSSEKPDIVAASATSS 133


>Medtr6g011470.1 | PCF11P-related protein | HC |
           chr6:3262423-3263241 | 20130731
          Length = 210

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 58/122 (47%), Gaps = 31/122 (25%)

Query: 417 MPFPLPGQNMVNNSLHFLGGXXXXXXXXXXXXXXXXXXXXXVSSQRPTVPYSNLFSSLVA 476
           MP P+P Q + NNS+  L                       VSSQ+PTV YSNL SSLVA
Sbjct: 1   MPLPMPDQRIGNNSMRPL---PPAGPHALPQILPHPNPGPNVSSQQPTVGYSNLISSLVA 57

Query: 477 QGVISFPNQAPAQDSVGIEFNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNH 536
           QGVIS  NQAPA                            P +CTTCGLR K +DEHS+H
Sbjct: 58  QGVISLANQAPA----------------------------PAECTTCGLRLKSKDEHSSH 89

Query: 537 MD 538
           MD
Sbjct: 90  MD 91