Miyakogusa Predicted Gene

Lj3g3v1541250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1541250.1 Non Characterized Hit- tr|I1JKM9|I1JKM9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.4975
PE=,84.96,0,RING/U-box,NULL; ZF_RING_1,Zinc finger, RING-type,
conserved site; ZF_RING_2,Zinc finger,
RING-type;,NODE_48212_length_1264_cov_72.564873.path2.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g109250.2 | RING zinc finger protein, putative | HC | chr7...   214   2e-56
Medtr7g109250.3 | RING zinc finger protein, putative | HC | chr7...   214   2e-56
Medtr7g109250.1 | RING zinc finger protein, putative | HC | chr7...   213   3e-56
Medtr8g023300.1 | transmembrane protein, putative | LC | chr8:83...    48   2e-06
Medtr8g058593.1 | zinc finger C-x8-C-x5-C-x3-H type protein | LC...    47   5e-06
Medtr7g108868.1 | zinc finger C-x8-C-x5-C-x3-H type protein | LC...    47   5e-06

>Medtr7g109250.2 | RING zinc finger protein, putative | HC |
           chr7:44660061-44664150 | 20130731
          Length = 327

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/113 (86%), Positives = 105/113 (92%), Gaps = 1/113 (0%)

Query: 1   MHDRGDYKSGWQLEKDWDDAEKARKMRLAAGEDAVEEGANVTDEEDD-DSLPFACFICRQ 59
           MHDRGDYKSGWQ+EK+WD+AEKARKMRLA GEDA EEGA++ DE+DD D+LPFACFICR 
Sbjct: 214 MHDRGDYKSGWQMEKEWDEAEKARKMRLATGEDAEEEGASLNDEDDDEDALPFACFICRN 273

Query: 60  PFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQEIRKKMAED 112
           PFVDPV TKCKHYFCEHCALKHHAKNKKCFVCNQPTLG FNVA EIRKKMAED
Sbjct: 274 PFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAED 326


>Medtr7g109250.3 | RING zinc finger protein, putative | HC |
           chr7:44660061-44664150 | 20130731
          Length = 327

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/113 (86%), Positives = 105/113 (92%), Gaps = 1/113 (0%)

Query: 1   MHDRGDYKSGWQLEKDWDDAEKARKMRLAAGEDAVEEGANVTDEEDD-DSLPFACFICRQ 59
           MHDRGDYKSGWQ+EK+WD+AEKARKMRLA GEDA EEGA++ DE+DD D+LPFACFICR 
Sbjct: 214 MHDRGDYKSGWQMEKEWDEAEKARKMRLATGEDAEEEGASLNDEDDDEDALPFACFICRN 273

Query: 60  PFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQEIRKKMAED 112
           PFVDPV TKCKHYFCEHCALKHHAKNKKCFVCNQPTLG FNVA EIRKKMAED
Sbjct: 274 PFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAED 326


>Medtr7g109250.1 | RING zinc finger protein, putative | HC |
           chr7:44660066-44664150 | 20130731
          Length = 387

 Score =  213 bits (542), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/113 (86%), Positives = 105/113 (92%), Gaps = 1/113 (0%)

Query: 1   MHDRGDYKSGWQLEKDWDDAEKARKMRLAAGEDAVEEGANVTDEEDD-DSLPFACFICRQ 59
           MHDRGDYKSGWQ+EK+WD+AEKARKMRLA GEDA EEGA++ DE+DD D+LPFACFICR 
Sbjct: 274 MHDRGDYKSGWQMEKEWDEAEKARKMRLATGEDAEEEGASLNDEDDDEDALPFACFICRN 333

Query: 60  PFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQEIRKKMAED 112
           PFVDPV TKCKHYFCEHCALKHHAKNKKCFVCNQPTLG FNVA EIRKKMAED
Sbjct: 334 PFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAED 386


>Medtr8g023300.1 | transmembrane protein, putative | LC |
           chr8:8378930-8375897 | 20130731
          Length = 114

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 9/43 (20%)

Query: 30  AGEDAVEEGANVTDEEDDDSLPFACFICRQPFVDPVVTKCKHY 72
            GEDA EE A++ DE+D+DSL         PFVDPV TKCKHY
Sbjct: 78  VGEDAEEESASLNDEDDEDSL---------PFVDPVSTKCKHY 111


>Medtr8g058593.1 | zinc finger C-x8-C-x5-C-x3-H type protein | LC |
           chr8:20209399-20208039 | 20130731
          Length = 185

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 1   MHDRGDYKSGWQLEKDWDDAEKARK 25
           +HDR DYKSGWQLEK+W++ EK RK
Sbjct: 103 LHDRTDYKSGWQLEKEWNETEKRRK 127


>Medtr7g108868.1 | zinc finger C-x8-C-x5-C-x3-H type protein | LC |
           chr7:44293911-44292551 | 20130731
          Length = 185

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 1   MHDRGDYKSGWQLEKDWDDAEKARK 25
           +HDR DYKSGWQLEK+W++ EK RK
Sbjct: 103 LHDRTDYKSGWQLEKEWNETEKRRK 127