Miyakogusa Predicted Gene

Lj3g3v1528000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1528000.1 Non Characterized Hit- tr|G7JV99|G7JV99_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,55.79,9e-19,
,CUFF.42799.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g113740.1 | transmembrane protein, putative | HC | chr4:46...    98   2e-21

>Medtr4g113740.1 | transmembrane protein, putative | HC |
           chr4:46812595-46809774 | 20130731
          Length = 734

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%), Gaps = 2/95 (2%)

Query: 11  VQTSMDSSSTADRWESRNNVLDSEGFKVRMKHMESESSYTCKELLDQSHETFRSSHDKRE 70
           +   MDSSS AD WES  + LDSE  KVRMK +ESE+S+  ++LL+Q  E FRSS DKR+
Sbjct: 374 ISLKMDSSSVADMWESHESRLDSESIKVRMKRVESETSFLHEQLLNQGQEAFRSSIDKRD 433

Query: 71  SMSDRSRYVQ--DRVDYGDHHHLANDLSEGENEFN 103
           S  DRSRY +  DR++Y     LA+DLSE +NEFN
Sbjct: 434 SGPDRSRYEEDRDRMNYDADQLLADDLSESDNEFN 468