Miyakogusa Predicted Gene

Lj3g3v1461450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1461450.1 Non Characterized Hit- tr|D7SHN7|D7SHN7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,29.65,0.000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.42644.1
         (350 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g027070.1 | transmembrane protein, putative | HC | chr4:93...   533   e-152
Medtr3g077500.1 | transmembrane protein, putative | HC | chr3:34...    53   4e-07

>Medtr4g027070.1 | transmembrane protein, putative | HC |
           chr4:9319572-9314496 | 20130731
          Length = 344

 Score =  533 bits (1374), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 262/340 (77%), Positives = 291/340 (85%), Gaps = 3/340 (0%)

Query: 6   ASLTQTHYPINTSTLRRAHPRSQKLLKSGKLFQLQGLSFPSIHINQSRVCCTKLTPWEPS 65
           +SL  THY ++TST  RA+PRS  LLKSGK FQ +  +FPSI +NQS +CCTKLTPWEPS
Sbjct: 3   SSLIHTHYKLHTSTFERAYPRSHGLLKSGKPFQSRRFNFPSIRLNQSFICCTKLTPWEPS 62

Query: 66  P-VTYAPTDKQSDNFLQNSANIFETLDSSETAESPTANAEGLKETKYQPGLQLQFLKWPM 124
           P V YAPTD QSDNFLQ++A++FETL+SS+  ESPTAN EGL E K +PG +LQ  KWPM
Sbjct: 63  PGVAYAPTDNQSDNFLQSTASVFETLESSKVDESPTANVEGLVEEKDRPGPELQLFKWPM 122

Query: 125 WLLGPSILLVTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRP 184
           WLLGPSILL TGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRP
Sbjct: 123 WLLGPSILLATGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRP 182

Query: 185 KNPMQDCKSKAPFSYQFWNIVATLTGFVVPLLMMLGSQKGVSVLQPQLPSISFAVXXXXX 244
           KNP Q+ KSKAPFSYQFWNIVATLTGF+VP L+M GSQKG   LQPQLP IS AV     
Sbjct: 183 KNPTQEIKSKAPFSYQFWNIVATLTGFIVPSLLMFGSQKG--FLQPQLPFISSAVLLGPY 240

Query: 245 XXXXSVQILTEMLTWHWQSPVWLVTPVIYESYRVLQLMRGLKLGVELSAPAWIMHSIRGL 304
               SVQILTE+LTW+WQSPVWLVTP+IYE+YR+LQLMRGLKLG EL+APAW+MH+IRGL
Sbjct: 241 LLLLSVQILTELLTWYWQSPVWLVTPIIYEAYRILQLMRGLKLGAELTAPAWMMHTIRGL 300

Query: 305 VCWWVLILGLQLMRVAWFAGLTARARKQQQSSSDTSVANG 344
           VCWWVLILGLQLMRVAWFAGL+ARARK Q SSS+ S ANG
Sbjct: 301 VCWWVLILGLQLMRVAWFAGLSARARKDQSSSSEASTANG 340


>Medtr3g077500.1 | transmembrane protein, putative | HC |
           chr3:34811954-34816546 | 20130731
          Length = 376

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 43/217 (19%)

Query: 124 MWLLGPSILLVTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADSC 181
           +W +GP++L+ + + P+L+L   +S IF    +   L L   + IF  G  +FL + D  
Sbjct: 157 LWFVGPAVLVASFIFPSLYLRKLLSIIFEDSLLTDFLILFFTEAIFYGGVAVFLFLLDHL 216

Query: 182 SRP---KNPMQDCKSKAPFSYQFWNIVATLT-GFVVPLLMML-----GSQKGVSVLQPQL 232
            RP       ++  +  P   Q  + VATL    V+P++ M            + L P L
Sbjct: 217 RRPIQLDTATKNTDTLPPQLGQKISSVATLVLSLVIPMVTMGLVWPWTGPAASATLAPYL 276

Query: 233 PSISFAVXXXXXXXXXSVQILTEMLTWHWQSPVWLVTPVIYESYRVLQLMRGLKL----- 287
             I              VQ   E    + +SP W   P+I++ YR+ QL R  +L     
Sbjct: 277 VGIV-------------VQFAFEQYARYRKSPSWSAIPLIFQVYRLHQLNRAAQLVTALS 323

Query: 288 ----GVELSAPAWIMHS----------IRGLVCWWVL 310
               G EL++    ++S            G++C W L
Sbjct: 324 FTVRGAELTSHNMAINSSLGTLLNVLQFLGVICIWSL 360