Miyakogusa Predicted Gene

Lj3g3v1440180.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1440180.3 Non Characterized Hit- tr|G7IJ51|G7IJ51_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,53.06,3e-17,Likely ribonuclease with RNase H
fold.,YqgF/RNase H-like domain; RNAse_H_YqgF: RNAse H domain
protei,CUFF.42649.3
         (237 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g027430.1 | holliday junction resolvase-like protein | HC ...   335   3e-92
Medtr2g064690.1 | holliday junction resolvase-like protein | HC ...   199   2e-51
Medtr2g064700.1 | hypothetical protein | HC | chr2:29286402-2928...    94   1e-19
Medtr2g064670.1 | hypothetical protein | LC | chr2:29305267-2930...    89   4e-18

>Medtr4g027430.1 | holliday junction resolvase-like protein | HC |
           chr4:9512166-9507210 | 20130731
          Length = 231

 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 165/238 (69%), Positives = 198/238 (83%), Gaps = 8/238 (3%)

Query: 1   MWTKQ-LLQAPPPHNLFLCCSAPSVPKKPSFVKLCPTQNAKNHYNRVKAISLDELPPNAL 59
           MWT+Q L+Q  PP  LF      +  K  S  KL  TQN K        ++L+ELPPNAL
Sbjct: 1   MWTQQQLVQPVPPLKLFHSFQPSNHAKIQSLSKLNSTQNLKT------PLTLEELPPNAL 54

Query: 60  RRKSDPQWRGGFTLGVDLGMARTGIAISKGFNFRPVTVLELRGQKLEVQMINIAEQEEAD 119
           RRK D +WRGGF+LGVDLGMARTGIA+SKGF FRP+TVL+LRGQKLEV+++NIAE+EEAD
Sbjct: 55  RRKKDAEWRGGFSLGVDLGMARTGIALSKGFTFRPLTVLKLRGQKLEVRIMNIAEEEEAD 114

Query: 120 EFVIGLPRSFDGKETPQSNIVRTVAGRLAIRAAERGWRVYLQDEHGTTTEAVDRMVNMGL 179
           EF+IGLP+S DG+ET QSNIVR+VAGRLAIRAAERGWRVYL DE+GTT  A+DRM+NMG+
Sbjct: 115 EFIIGLPKSSDGEETIQSNIVRSVAGRLAIRAAERGWRVYLHDEYGTTNAAIDRMINMGV 174

Query: 180 SKSSQQRKLDAYAAMMVLERYFSTSGKDTELVLPKNLELQGKLRKGPPKDNDFFSDED 237
           ++ SQQ+K DAYAA+M+LERYFSTSG+ TELV+PKNLELQGKLR GPP+D+D+FSDED
Sbjct: 175 NR-SQQKKQDAYAAVMLLERYFSTSGQKTELVVPKNLELQGKLRTGPPRDDDYFSDED 231


>Medtr2g064690.1 | holliday junction resolvase-like protein | HC |
           chr2:29288077-29290315 | 20130731
          Length = 129

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 115/130 (88%), Gaps = 3/130 (2%)

Query: 110 INIAEQEEADEFVIGLPRSFDGKETPQSNIVRTVAGRLAIRAAERGWRVYLQDEHGTTTE 169
           +NIAE+EEADEF+IGL +S DG+ET QSNIVR+VAGRLAIRAAE GWRVYL DE+GTT  
Sbjct: 1   MNIAEEEEADEFIIGLSKSSDGEETIQSNIVRSVAGRLAIRAAEWGWRVYLHDEYGTTNA 60

Query: 170 AVDRMVNMGLSKSSQQRKLDAYAAM--MVLERYFSTSGKDTELVLPKNLELQGKLRKGPP 227
           A+DRM+NMG+++ SQQ+K DAYA +  M+LERYFSTSG+  ELV+PKNLELQGKLR GPP
Sbjct: 61  AIDRMINMGVNR-SQQKKQDAYAVVISMLLERYFSTSGQKAELVVPKNLELQGKLRSGPP 119

Query: 228 KDNDFFSDED 237
           +D+D+FSDED
Sbjct: 120 RDDDYFSDED 129


>Medtr2g064700.1 | hypothetical protein | HC |
          chr2:29286402-29286121 | 20130731
          Length = 93

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 61/97 (62%), Gaps = 13/97 (13%)

Query: 1  MWTKQLLQAPPPHNLFLCCSAPSVPKKPSFVKLCPTQNAKNHYNRVKAISLDELPPNALR 60
          MWT+       P  LF         K  S  KL  TQN K        ++L+ELPPNALR
Sbjct: 1  MWTQ-------PLKLFHSFPPSIHAKIQSLSKLNSTQNLKT------PLTLEELPPNALR 47

Query: 61 RKSDPQWRGGFTLGVDLGMARTGIAISKGFNFRPVTV 97
          RK D +WRGGF+LGVDLGMARTGIA+SKGF FRP+TV
Sbjct: 48 RKKDEEWRGGFSLGVDLGMARTGIALSKGFTFRPLTV 84


>Medtr2g064670.1 | hypothetical protein | LC |
          chr2:29305267-29305518 | 20130731
          Length = 83

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 60/89 (67%), Gaps = 7/89 (7%)

Query: 1  MWTKQ-LLQAPPPHNLFLCCSAPSVPKKPSFVKLCPTQNAKNHYNRVKAISLDELPPNAL 59
          MWT+Q L+Q  PP  LF      +  K  S  KL  TQ+ K       A++L+ELPPNAL
Sbjct: 1  MWTQQQLVQPVPPLKLFHSFQPSNHAKIQSLSKLNSTQSLKT------ALTLEELPPNAL 54

Query: 60 RRKSDPQWRGGFTLGVDLGMARTGIAISK 88
          RRK D +WRGGF+LGVDLGMARTGIA++K
Sbjct: 55 RRKKDAEWRGGFSLGVDLGMARTGIALNK 83