Miyakogusa Predicted Gene

Lj3g3v1428130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1428130.1 tr|A9SYE5|A9SYE5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_231705,34.07,2e-16,coiled-coil,NULL,CUFF.42635.1
         (173 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g445370.1 | hypothetical protein | HC | chr7:15310254-1532...   254   2e-68
Medtr7g445370.2 | hypothetical protein | HC | chr7:15310254-1532...   254   3e-68
Medtr4g083250.2 | hypothetical protein | HC | chr4:32406839-3240...    84   5e-17
Medtr4g083250.1 | hypothetical protein | HC | chr4:32406839-3239...    84   7e-17

>Medtr7g445370.1 | hypothetical protein | HC |
           chr7:15310254-15322182 | 20130731
          Length = 264

 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 145/176 (82%), Gaps = 4/176 (2%)

Query: 1   MATVVESSESDTPP--PAPG-NHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESA 57
           MATV ESSE + PP  PAP  N STT+N  TLD   PFIDYAVG  L YQK FNDAV+SA
Sbjct: 1   MATVAESSEPEAPPSTPAPTVNQSTTTNPQTLD-VKPFIDYAVGHVLYYQKTFNDAVDSA 59

Query: 58  IDASKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCG 117
           IDAS SRFSQIRSTSSAHF Q+L  LDDFKSQYNAYE+LLFGKIKEGVLVA+SHPVIT G
Sbjct: 60  IDASTSRFSQIRSTSSAHFHQSLDYLDDFKSQYNAYEELLFGKIKEGVLVAASHPVITSG 119

Query: 118 AAAATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKW 173
           A A+ GL+V KRPRR LYYN  RLF++EE+L+S+AS EVKELR+SIDLLK+E E+ 
Sbjct: 120 ATASMGLLVLKRPRRFLYYNMQRLFVSEESLVSKASEEVKELRQSIDLLKSEVERM 175


>Medtr7g445370.2 | hypothetical protein | HC |
           chr7:15310254-15322182 | 20130731
          Length = 276

 Score =  254 bits (648), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 145/176 (82%), Gaps = 4/176 (2%)

Query: 1   MATVVESSESDTPP--PAPG-NHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESA 57
           MATV ESSE + PP  PAP  N STT+N  TLD   PFIDYAVG  L YQK FNDAV+SA
Sbjct: 1   MATVAESSEPEAPPSTPAPTVNQSTTTNPQTLD-VKPFIDYAVGHVLYYQKTFNDAVDSA 59

Query: 58  IDASKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCG 117
           IDAS SRFSQIRSTSSAHF Q+L  LDDFKSQYNAYE+LLFGKIKEGVLVA+SHPVIT G
Sbjct: 60  IDASTSRFSQIRSTSSAHFHQSLDYLDDFKSQYNAYEELLFGKIKEGVLVAASHPVITSG 119

Query: 118 AAAATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKW 173
           A A+ GL+V KRPRR LYYN  RLF++EE+L+S+AS EVKELR+SIDLLK+E E+ 
Sbjct: 120 ATASMGLLVLKRPRRFLYYNMQRLFVSEESLVSKASEEVKELRQSIDLLKSEVERM 175


>Medtr4g083250.2 | hypothetical protein | HC |
           chr4:32406839-32400441 | 20130731
          Length = 240

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 56  SAIDASKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVIT 115
           SAI+++++    ++  S+ HF+     L    SQY  YED  F K+K+GV+VA  +P I 
Sbjct: 64  SAIESART----VQHNSTTHFRTFQNFLPGAVSQYRTYEDAFFNKVKDGVMVARENPAIG 119

Query: 116 CGAAAATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKW 173
            G A +T L+V + PRR L+ +T+  F +EE   + A   VK+L  S+DLLK E  K 
Sbjct: 120 VGLAVSTALLVMRGPRRFLFRHTLGRFQSEEARYASAEKNVKDLNLSVDLLKKESIKL 177


>Medtr4g083250.1 | hypothetical protein | HC |
           chr4:32406839-32399916 | 20130731
          Length = 266

 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 56  SAIDASKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVIT 115
           SAI+++++    ++  S+ HF+     L    SQY  YED  F K+K+GV+VA  +P I 
Sbjct: 64  SAIESART----VQHNSTTHFRTFQNFLPGAVSQYRTYEDAFFNKVKDGVMVARENPAIG 119

Query: 116 CGAAAATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKW 173
            G A +T L+V + PRR L+ +T+  F +EE   + A   VK+L  S+DLLK E  K 
Sbjct: 120 VGLAVSTALLVMRGPRRFLFRHTLGRFQSEEARYASAEKNVKDLNLSVDLLKKESIKL 177