Miyakogusa Predicted Gene

Lj3g3v1410690.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1410690.1 Non Characterized Hit- tr|B9R8H5|B9R8H5_RICCO
Ubiquitin-protein ligase, putative OS=Ricinus
communis,30.04,0.000000005,DUF295,Protein of unknown function
DUF295,CUFF.42600.1
         (233 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g114990.1 | ubiquitin-protein ligase | HC | chr3:53705316-...    49   3e-06
Medtr3g114990.3 | ubiquitin-protein ligase | HC | chr3:53705316-...    49   3e-06
Medtr3g114990.2 | ubiquitin-protein ligase | HC | chr3:53705316-...    49   3e-06

>Medtr3g114990.1 | ubiquitin-protein ligase | HC |
           chr3:53705316-53703014 | 20130731
          Length = 410

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 50/213 (23%)

Query: 9   VIAGITCGWNLTWCSIGDQEWKECRSNGKYL---NVTFHNGKLYAI---------NLNCD 56
           ++ G +C  NL +C  G   W        Y    +V ++NG  YA+         ++N  
Sbjct: 194 IVDGYSCN-NLAFCKKGYDSWIFLTKKNDYYFWEDVVYYNGLFYAVSKGGTIAVCDVNSH 252

Query: 57  KIDIFRVDNDQQKLILLDTICVTFPTVSRRSDIFDVYLVESKGSLLVVKR--------NY 108
           ++ IF++           T+ V F       DI   Y+V S   +L+V R          
Sbjct: 253 RVSIFQM-----------TVPVQF-----SGDIH--YVVFSGEDMLLVNRVLEEDFSDEP 294

Query: 109 DYGALIHPTIGFDIFKVQERISGDSPHLLVNVESLEDQALFFSGLFYESLSAKDCPGLRG 168
           +Y  L++ T+GF +FK+       +      +E+L D+ALF         SA D  G  G
Sbjct: 295 NYDMLVYRTVGFTVFKMDWNAMAWN-----RIEALGDKALFVGVNSSMCFSAGDFVGCCG 349

Query: 169 NRIYFI------GHQGGNVDSEFGLFSLEEGII 195
           + IYF        H       +FG+F L +GII
Sbjct: 350 DCIYFTDDYSEDNHDDACGKHDFGIFRLYDGII 382


>Medtr3g114990.3 | ubiquitin-protein ligase | HC |
           chr3:53705316-53701730 | 20130731
          Length = 410

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 50/213 (23%)

Query: 9   VIAGITCGWNLTWCSIGDQEWKECRSNGKYL---NVTFHNGKLYAI---------NLNCD 56
           ++ G +C  NL +C  G   W        Y    +V ++NG  YA+         ++N  
Sbjct: 194 IVDGYSCN-NLAFCKKGYDSWIFLTKKNDYYFWEDVVYYNGLFYAVSKGGTIAVCDVNSH 252

Query: 57  KIDIFRVDNDQQKLILLDTICVTFPTVSRRSDIFDVYLVESKGSLLVVKR--------NY 108
           ++ IF++           T+ V F       DI   Y+V S   +L+V R          
Sbjct: 253 RVSIFQM-----------TVPVQF-----SGDIH--YVVFSGEDMLLVNRVLEEDFSDEP 294

Query: 109 DYGALIHPTIGFDIFKVQERISGDSPHLLVNVESLEDQALFFSGLFYESLSAKDCPGLRG 168
           +Y  L++ T+GF +FK+       +      +E+L D+ALF         SA D  G  G
Sbjct: 295 NYDMLVYRTVGFTVFKMDWNAMAWN-----RIEALGDKALFVGVNSSMCFSAGDFVGCCG 349

Query: 169 NRIYFI------GHQGGNVDSEFGLFSLEEGII 195
           + IYF        H       +FG+F L +GII
Sbjct: 350 DCIYFTDDYSEDNHDDACGKHDFGIFRLYDGII 382


>Medtr3g114990.2 | ubiquitin-protein ligase | HC |
           chr3:53705316-53701195 | 20130731
          Length = 410

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 50/213 (23%)

Query: 9   VIAGITCGWNLTWCSIGDQEWKECRSNGKYL---NVTFHNGKLYAI---------NLNCD 56
           ++ G +C  NL +C  G   W        Y    +V ++NG  YA+         ++N  
Sbjct: 194 IVDGYSCN-NLAFCKKGYDSWIFLTKKNDYYFWEDVVYYNGLFYAVSKGGTIAVCDVNSH 252

Query: 57  KIDIFRVDNDQQKLILLDTICVTFPTVSRRSDIFDVYLVESKGSLLVVKR--------NY 108
           ++ IF++           T+ V F       DI   Y+V S   +L+V R          
Sbjct: 253 RVSIFQM-----------TVPVQF-----SGDIH--YVVFSGEDMLLVNRVLEEDFSDEP 294

Query: 109 DYGALIHPTIGFDIFKVQERISGDSPHLLVNVESLEDQALFFSGLFYESLSAKDCPGLRG 168
           +Y  L++ T+GF +FK+       +      +E+L D+ALF         SA D  G  G
Sbjct: 295 NYDMLVYRTVGFTVFKMDWNAMAWN-----RIEALGDKALFVGVNSSMCFSAGDFVGCCG 349

Query: 169 NRIYFI------GHQGGNVDSEFGLFSLEEGII 195
           + IYF        H       +FG+F L +GII
Sbjct: 350 DCIYFTDDYSEDNHDDACGKHDFGIFRLYDGII 382