Miyakogusa Predicted Gene
- Lj3g3v1409680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1409680.1 Non Characterized Hit- tr|B8A0Y3|B8A0Y3_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,35.89,1e-17,seg,NULL;
coiled-coil,NULL,NODE_28991_length_879_cov_25.144482.path2.1
(214 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g085200.1 | cyclin-dependent kinase | HC | chr2:33272849-3... 298 2e-81
Medtr4g078290.1 | cyclin-dependent kinase | HC | chr4:30155456-3... 70 2e-12
Medtr4g078290.2 | cyclin-dependent kinase | HC | chr4:30155456-3... 70 2e-12
Medtr2g090405.1 | cyclin-dependent kinase | HC | chr2:38536819-3... 57 1e-08
Medtr2g090405.2 | cyclin-dependent kinase | HC | chr2:38537160-3... 57 1e-08
>Medtr2g085200.1 | cyclin-dependent kinase | HC |
chr2:33272849-33266613 | 20130731
Length = 712
Score = 298 bits (763), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/226 (69%), Positives = 172/226 (76%), Gaps = 12/226 (5%)
Query: 1 MQKRQGKTYSQSRSEKFNPHPEEVASGFPIDPPRPSQAVEVSRDSQVHQHKRASHSGPLN 60
MQKRQG+ YSQSRSEKFNPHPE+ SGFPI+PPRPSQA E + D Q +QHKRASHSGPL
Sbjct: 487 MQKRQGQNYSQSRSEKFNPHPEDAGSGFPIEPPRPSQAAEANVDPQANQHKRASHSGPLT 546
Query: 61 HRNV----------APKISMGGDLPTSSGLVASRRSMLSDNRGETSGLSQAEAPKLITWF 110
HR APKIS+GGDL T SGLVA+RRSMLSD+R E+SG SQ EAPKLIT F
Sbjct: 547 HRAAWAKAGKNQDDAPKISVGGDLSTMSGLVAARRSMLSDDRRESSGSSQVEAPKLITRF 606
Query: 111 PGSFKDASEPLTRQDQ--KHHGHAPQKEEGRCSNQDPNLVGYGSKGYKIHYSGPLLVPSS 168
PGSFK+ASE L +Q+Q KHH HA QKE+ + SN+DPN VGYGSKGYKIHYSGPLLVPSS
Sbjct: 607 PGSFKEASESLMQQNQNQKHHVHASQKEDAKGSNKDPNNVGYGSKGYKIHYSGPLLVPSS 666
Query: 169 NTDQMLKDHDRQIQEAGXXXXXXXXXXXXXQAQGNDITNILFVSGR 214
N DQMLKDHDRQIQEA QA+GN I N LFVSGR
Sbjct: 667 NMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQINNSLFVSGR 712
>Medtr4g078290.1 | cyclin-dependent kinase | HC |
chr4:30155456-30159988 | 20130731
Length = 686
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 94/202 (46%), Gaps = 36/202 (17%)
Query: 5 QGKTYS--QSRSEKFNPHPEEVASGFPIDPPRPSQAV-EVSRDSQVHQHKRASHSGPL-- 59
Q K YS ++RSE PH E V SG P + S+ V E + H + R SHSGPL
Sbjct: 483 QQKHYSITKNRSELSYPHREHV-SGTQGYPHKQSKDVKETENNLSGHFYNRPSHSGPLVP 541
Query: 60 --------NHRNVAPKISMGGDLPTSSGLVASRRSMLSDNRGETSGLSQAEAPKLITWFP 111
+ P +S +L SGLVASR + LS+ + PK + FP
Sbjct: 542 GSGWARGAKEVDNGPTVSNRVNLSKLSGLVASR-----------TLLSEDQEPKPVPSFP 590
Query: 112 ----------GSFKDASEPLTRQDQKHHGHAPQKEEGRCSNQDPNLVGYGSKGYKIHYSG 161
+ SE R+D+K Q R + G+GS G KI+ SG
Sbjct: 591 YRKSIEVRKSVEATNGSESRRRRDKKRIVDQSQIVNRRVPTEKSTPDGHGSSGNKIYMSG 650
Query: 162 PLLVPSSNTDQMLKDHDRQIQE 183
PLL S+N DQMLKDHDR+IQE
Sbjct: 651 PLLA-SNNMDQMLKDHDRKIQE 671
>Medtr4g078290.2 | cyclin-dependent kinase | HC |
chr4:30155456-30159995 | 20130731
Length = 685
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 92/197 (46%), Gaps = 34/197 (17%)
Query: 8 TYSQSRSEKFNPHPEEVASGFPIDPPRPSQAV-EVSRDSQVHQHKRASHSGPL------- 59
+ +++RSE PH E V SG P + S+ V E + H + R SHSGPL
Sbjct: 487 SITKNRSELSYPHREHV-SGTQGYPHKQSKDVKETENNLSGHFYNRPSHSGPLVPGSGWA 545
Query: 60 ---NHRNVAPKISMGGDLPTSSGLVASRRSMLSDNRGETSGLSQAEAPKLITWFP----- 111
+ P +S +L SGLVASR + LS+ + PK + FP
Sbjct: 546 RGAKEVDNGPTVSNRVNLSKLSGLVASR-----------TLLSEDQEPKPVPSFPYRKSI 594
Query: 112 -----GSFKDASEPLTRQDQKHHGHAPQKEEGRCSNQDPNLVGYGSKGYKIHYSGPLLVP 166
+ SE R+D+K Q R + G+GS G KI+ SGPLL
Sbjct: 595 EVRKSVEATNGSESRRRRDKKRIVDQSQIVNRRVPTEKSTPDGHGSSGNKIYMSGPLLA- 653
Query: 167 SSNTDQMLKDHDRQIQE 183
S+N DQMLKDHDR+IQE
Sbjct: 654 SNNMDQMLKDHDRKIQE 670
>Medtr2g090405.1 | cyclin-dependent kinase | HC |
chr2:38536819-38541654 | 20130731
Length = 683
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 1 MQKRQGKTYSQSRSEKFNPHPEEVASGFPIDPPRPSQAV-EVSRDSQVHQHKRASHSGPL 59
MQ+ Q SR+E FNPH E ASGF + P + S+ V E + + R+SHSG L
Sbjct: 494 MQQGQHFPNMTSRNESFNPH-REPASGFMVLPHKQSEDVKETANYFSGPLYPRSSHSGLL 552
Query: 60 NHRNVAPKISMGGDLPTSSGLVASRRSMLSD-NRGETSGLSQAEAPKLITWFP------- 111
+ KI G + L S ++ LS +R SG +Q E P W P
Sbjct: 553 VPGSGRHKI---GKEASERPLPVSTKANLSKPSRTSFSG-NQKENPA--PWRPQDTIQVQ 606
Query: 112 GSF--KDASEPLTRQDQKHHGHAP---QKEEGRCSNQDPNLVGYGSKGYKIHYSGPLLVP 166
SF SE R D+K H Q E G+ N S G ++ SGPLLV
Sbjct: 607 KSFGLSSGSESRKRHDKKRHSKIADLSQTENGKDGNV--------SSGNNLYMSGPLLVS 658
Query: 167 SSNTDQMLKDHDRQIQE 183
S+N DQMLK+ D+++QE
Sbjct: 659 SNNMDQMLKERDKKLQE 675
>Medtr2g090405.2 | cyclin-dependent kinase | HC |
chr2:38537160-38541654 | 20130731
Length = 683
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 1 MQKRQGKTYSQSRSEKFNPHPEEVASGFPIDPPRPSQAV-EVSRDSQVHQHKRASHSGPL 59
MQ+ Q SR+E FNPH E ASGF + P + S+ V E + + R+SHSG L
Sbjct: 494 MQQGQHFPNMTSRNESFNPH-REPASGFMVLPHKQSEDVKETANYFSGPLYPRSSHSGLL 552
Query: 60 NHRNVAPKISMGGDLPTSSGLVASRRSMLSD-NRGETSGLSQAEAPKLITWFP------- 111
+ KI G + L S ++ LS +R SG +Q E P W P
Sbjct: 553 VPGSGRHKI---GKEASERPLPVSTKANLSKPSRTSFSG-NQKENPA--PWRPQDTIQVQ 606
Query: 112 GSF--KDASEPLTRQDQKHHGHAP---QKEEGRCSNQDPNLVGYGSKGYKIHYSGPLLVP 166
SF SE R D+K H Q E G+ N S G ++ SGPLLV
Sbjct: 607 KSFGLSSGSESRKRHDKKRHSKIADLSQTENGKDGNV--------SSGNNLYMSGPLLVS 658
Query: 167 SSNTDQMLKDHDRQIQE 183
S+N DQMLK+ D+++QE
Sbjct: 659 SNNMDQMLKERDKKLQE 675