Miyakogusa Predicted Gene

Lj3g3v1403940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1403940.1 tr|K1QEF6|K1QEF6_CRAGI E3 ubiquitin-protein
ligase Hakai OS=Crassostrea gigas PE=4
SV=1,54.55,0.00000003,ZF_RING_1,Zinc finger, RING-type, conserved
site; E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED,NULL,CUFF.42545.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g066710.1 | RING/U-box protein | HC | chr7:24295276-242984...   212   5e-56
Medtr7g056183.1 | RING/U-box protein | HC | chr7:19624899-196208...   209   6e-55

>Medtr7g066710.1 | RING/U-box protein | HC | chr7:24295276-24298410
           | 20130731
          Length = 434

 Score =  212 bits (540), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 98/112 (87%), Positives = 106/112 (94%)

Query: 1   MLQIRLSKTPASEGSAGVKVSPAETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRR 60
           MLQIRLSK P+S+GSAGVK SP ETVTVACPDHLVLADLPVAKGIG ATA+S+V+ +GRR
Sbjct: 1   MLQIRLSKNPSSDGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGIATASSVVRNIGRR 60

Query: 61  SRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQK 112
           SRRQLGERVHFCVRCDFPIAIYGRLSPC+HAFCLDCARSDS CYLC+ERIQK
Sbjct: 61  SRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSSCYLCEERIQK 112


>Medtr7g056183.1 | RING/U-box protein | HC | chr7:19624899-19620839
           | 20130731
          Length = 434

 Score =  209 bits (531), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 97/112 (86%), Positives = 105/112 (93%)

Query: 1   MLQIRLSKTPASEGSAGVKVSPAETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRR 60
           MLQIRLSK P+S+GSAGVK SP ETVTVACPDHLVLADLPVAKGIG ATA+S+V+ +GRR
Sbjct: 1   MLQIRLSKNPSSDGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGTATASSVVRNVGRR 60

Query: 61  SRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQK 112
           SRRQLGERVHFCVRCDFPIAIYGRLSPC+HAFCLDCARSDS CYLC+ RIQK
Sbjct: 61  SRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSSCYLCEGRIQK 112