Miyakogusa Predicted Gene

Lj3g3v1381530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1381530.1 tr|Q6YYA7|Q6YYA7_ORYSJ Os08g0359600 protein
OS=Oryza sativa subsp. japonica GN=OJ1014_E02.5 PE=3
SV=,77.19,3e-19,40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER,Ribosomal
protein S17; seg,NULL; Nucleic acid-binding protei,CUFF.42516.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g005030.1 | 30S ribosomal S17-like protein | HC | chr6:579...   119   2e-27
Medtr4g014360.1 | 30S ribosomal S17-like protein | HC | chr4:403...   118   2e-27
Medtr4g014360.2 | 30S ribosomal S17-like protein | HC | chr4:403...   118   2e-27

>Medtr6g005030.1 | 30S ribosomal S17-like protein | HC |
           chr6:579520-580699 | 20130731
          Length = 154

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 59/63 (93%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVPP 154
           F HK++NRY+KRTSKFMAHDENNLCNIGDRVRL+ SRPLSK K WVVAEILKKARIYVPP
Sbjct: 76  FHHKMFNRYIKRTSKFMAHDENNLCNIGDRVRLDSSRPLSKRKHWVVAEILKKARIYVPP 135

Query: 155 TST 157
           ++T
Sbjct: 136 SAT 138


>Medtr4g014360.1 | 30S ribosomal S17-like protein | HC |
           chr4:4037847-4036203 | 20130731
          Length = 103

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 60/63 (95%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVPP 154
           F HK++NRY+KRTSKFMAHDENNLCNIGDRVRL+ SRPLSK+K WVVAEILKKARIYVPP
Sbjct: 25  FHHKMFNRYIKRTSKFMAHDENNLCNIGDRVRLDSSRPLSKHKHWVVAEILKKARIYVPP 84

Query: 155 TST 157
           ++T
Sbjct: 85  SAT 87


>Medtr4g014360.2 | 30S ribosomal S17-like protein | HC |
           chr4:4037847-4036665 | 20130731
          Length = 103

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 60/63 (95%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVPP 154
           F HK++NRY+KRTSKFMAHDENNLCNIGDRVRL+ SRPLSK+K WVVAEILKKARIYVPP
Sbjct: 25  FHHKMFNRYIKRTSKFMAHDENNLCNIGDRVRLDSSRPLSKHKHWVVAEILKKARIYVPP 84

Query: 155 TST 157
           ++T
Sbjct: 85  SAT 87