Miyakogusa Predicted Gene
- Lj3g3v1378290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1378290.1 Non Characterized Hit- tr|I1L239|I1L239_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,29.93,0.00000000002,APO,APO domain; APO_RNA-bind,APO domain; APO4
(ACCUMULATION OF PHOTOSYSTEM ONE 4),NULL; EUKARYOTIC
T,NODE_65675_length_1665_cov_11.205405.path2.1
(333 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g088750.1 | APO RNA-binding protein | HC | chr2:37418951-3... 487 e-138
Medtr6g059930.2 | APO RNA-binding protein | HC | chr6:20582557-2... 195 5e-50
Medtr6g059930.1 | APO RNA-binding protein | HC | chr6:20583169-2... 195 6e-50
Medtr2g088390.1 | APO RNA-binding protein | HC | chr2:37254350-3... 186 3e-47
Medtr2g067610.1 | APO RNA-binding protein | HC | chr2:28298590-2... 186 3e-47
Medtr5g072520.1 | APO RNA-binding protein | HC | chr5:30879261-3... 133 2e-31
Medtr1g054885.1 | photosystem one accumulation protein | HC | ch... 52 1e-06
>Medtr2g088750.1 | APO RNA-binding protein | HC |
chr2:37418951-37422309 | 20130731
Length = 344
Score = 487 bits (1254), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/335 (73%), Positives = 270/335 (80%), Gaps = 7/335 (2%)
Query: 1 MALSKIPRHNVALFVESG----GCPRRCYATSKVDLRKFHPLILEKIEKRSQAYPVGTMV 56
MA +++ L+ + G G R YAT KVDLRK P+IL++IE+RSQ YPV M+
Sbjct: 1 MAFRNTFYNDLLLYQKLGQSCFGNRGRFYAT-KVDLRKLRPMILKRIERRSQLYPVRAMI 59
Query: 57 PVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRATNRVHE 116
PVA EVLL+RNVLIHGVSTLIN FP MACKFCPEIYIGEQGHLI TC GY+ RA NRVHE
Sbjct: 60 PVANEVLLARNVLIHGVSTLINSFPLMACKFCPEIYIGEQGHLIPTCRGYKRRAKNRVHE 119
Query: 117 WVKGCLNDIVVPVETFQLKNMFQGV-SHNQRFDSDRIPAVVELCWQAGAD-PDDKNLCPS 174
WVKG LNDI+VPVETF L NMFQ V H+QRFD DRI AVVELCWQAGAD P D+NL PS
Sbjct: 120 WVKGGLNDILVPVETFHLNNMFQNVIRHDQRFDFDRIAAVVELCWQAGADVPHDENLSPS 179
Query: 175 KWNLEAANGGVDGTESLSPNDLASIANNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHV 234
NLEAANG VDG ESLSPN LA +A TL AW+ LRSGV KLL VY VKVCK+CSEVHV
Sbjct: 180 SSNLEAANGNVDGFESLSPNVLAVVAKKTLEAWDVLRSGVEKLLLVYPVKVCKYCSEVHV 239
Query: 235 GPSDHKARLSGVFKCESWKGAHFWIKANVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRV 294
GPS HKARL GVFK ESWKGAHFW KANVD+LVPPKIVWRRRPQDPPVL+NEGRDFYGRV
Sbjct: 240 GPSGHKARLCGVFKHESWKGAHFWTKANVDNLVPPKIVWRRRPQDPPVLVNEGRDFYGRV 299
Query: 295 PAILDLCAKAGAIVPAEYNKMMKEQGLPGPANNKI 329
PA+LDLC KAG IVPA+YN +MK QGL GPAN K
Sbjct: 300 PAVLDLCTKAGVIVPAKYNVLMKVQGLSGPANYKF 334
>Medtr6g059930.2 | APO RNA-binding protein | HC |
chr6:20582557-20579088 | 20130731
Length = 419
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 164/297 (55%), Gaps = 31/297 (10%)
Query: 52 VGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRAT 111
V +VPVA EV + +LI G+S L++ P C C E+++ + GH I C G
Sbjct: 108 VPDLVPVAYEVFDAWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDCEGRTSSTR 167
Query: 112 NRVHEWVKGCLNDIVVPVETFQLKNMF-QGVSHNQRFDSDRIPAVVELCWQAGAD----P 166
+ H WV+G +NDI+VP+E++ L + F + + H+ RF+ DRIPAVVELC QAG D P
Sbjct: 168 HSSHAWVRGNVNDILVPIESYHLFDPFGKRIMHDTRFEYDRIPAVVELCIQAGVDIPEYP 227
Query: 167 DDKNLCPSKW----------NLEAA--------NGGVD-----GTESLSP---NDLASIA 200
+ P + +LE + +D E P +D+ IA
Sbjct: 228 SRRRTNPIRMVGRRVLDRGGHLEEPKPLRTAEFSSVIDFDTYRACERFPPPPLSDVPKIA 287
Query: 201 NNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFWIK 260
T+ A++T+R GV KL+ Y+VK C +CSEVHVGP H A+L G FK + G H W
Sbjct: 288 QETIDAYQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQWRDGKHGWQD 347
Query: 261 ANVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK 317
A +D ++PP VW R + P + + +YG+ PA++++C +AGA +PAEY +M+
Sbjct: 348 ATLDEVLPPNYVWHVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAEYKPLMR 404
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 51 PVGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRA 110
P+ + +A+E + + + GV L+ + AC +C E+++G GH + C ++H+
Sbjct: 279 PLSDVPKIAQETIDAYQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQW 338
Query: 111 TNRVHEWVKGCLNDIVVPVETFQLKNM-FQGVSHNQRFDSDRIPAVVELCWQAGA 164
+ H W L++++ P + +++ + + + PAVVE+C QAGA
Sbjct: 339 RDGKHGWQDATLDEVLPPNYVWHVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGA 393
>Medtr6g059930.1 | APO RNA-binding protein | HC |
chr6:20583169-20579100 | 20130731
Length = 451
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 164/297 (55%), Gaps = 31/297 (10%)
Query: 52 VGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRAT 111
V +VPVA EV + +LI G+S L++ P C C E+++ + GH I C G
Sbjct: 140 VPDLVPVAYEVFDAWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDCEGRTSSTR 199
Query: 112 NRVHEWVKGCLNDIVVPVETFQLKNMF-QGVSHNQRFDSDRIPAVVELCWQAGAD----P 166
+ H WV+G +NDI+VP+E++ L + F + + H+ RF+ DRIPAVVELC QAG D P
Sbjct: 200 HSSHAWVRGNVNDILVPIESYHLFDPFGKRIMHDTRFEYDRIPAVVELCIQAGVDIPEYP 259
Query: 167 DDKNLCPSKW----------NLEAA--------NGGVD-----GTESLSP---NDLASIA 200
+ P + +LE + +D E P +D+ IA
Sbjct: 260 SRRRTNPIRMVGRRVLDRGGHLEEPKPLRTAEFSSVIDFDTYRACERFPPPPLSDVPKIA 319
Query: 201 NNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFWIK 260
T+ A++T+R GV KL+ Y+VK C +CSEVHVGP H A+L G FK + G H W
Sbjct: 320 QETIDAYQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQWRDGKHGWQD 379
Query: 261 ANVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK 317
A +D ++PP VW R + P + + +YG+ PA++++C +AGA +PAEY +M+
Sbjct: 380 ATLDEVLPPNYVWHVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAEYKPLMR 436
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 51 PVGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRA 110
P+ + +A+E + + + GV L+ + AC +C E+++G GH + C ++H+
Sbjct: 311 PLSDVPKIAQETIDAYQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQW 370
Query: 111 TNRVHEWVKGCLNDIVVPVETFQLKNM-FQGVSHNQRFDSDRIPAVVELCWQAGA 164
+ H W L++++ P + +++ + + + PAVVE+C QAGA
Sbjct: 371 RDGKHGWQDATLDEVLPPNYVWHVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGA 425
>Medtr2g088390.1 | APO RNA-binding protein | HC |
chr2:37254350-37249092 | 20130731
Length = 447
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 161/303 (53%), Gaps = 32/303 (10%)
Query: 52 VGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRAT 111
V ++P A +V +R LI+ + L+ P AC +C EI++G GH ++C G +
Sbjct: 137 VKNLIPEAYDVYNARITLINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGTQSNIR 196
Query: 112 NRVHEWVKGCLNDIVVPVETFQLKNMF-QGVSHNQRFDSDRIPAVVELCWQAG------- 163
+HEW + DI++P++ F L + + ++H QRF RIPAVVELC QAG
Sbjct: 197 KGIHEWTNAHVEDILIPIDAFHLYDRLGKRITHEQRFSIPRIPAVVELCIQAGVKIREFP 256
Query: 164 ------------------AD----PDDKNLCPSKWNLEAANGGVDGTESLSPNDLASIAN 201
AD PD+ P++ L A D ++ ++ +A
Sbjct: 257 TKRRRKPIIRIGKKEFVDADESELPDEVPDNPTQ-PLIAEIPDSDIVAPVNKEEVVHLAE 315
Query: 202 NTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFWIKA 261
TL+AWE +R G +L+ +Y V+VC +C E+HVGPS HKA+ G K + G H W A
Sbjct: 316 ETLQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVGPSGHKAQNCGAHKHQQRNGQHGWQSA 375
Query: 262 NVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK-EQG 320
+D L+PP+ VW + P L E ++FYG+ PA++++C +AGA +P +Y M+ + G
Sbjct: 376 VLDDLIPPRFVWHVPDVNGPPLERELKNFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVG 435
Query: 321 LPG 323
+P
Sbjct: 436 IPS 438
>Medtr2g067610.1 | APO RNA-binding protein | HC |
chr2:28298590-28300383 | 20130731
Length = 329
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 161/303 (53%), Gaps = 32/303 (10%)
Query: 52 VGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRAT 111
V ++P A +V +R LI+ + L+ P AC +C EI++G GH ++C G +
Sbjct: 19 VKNLIPEAYDVYNARITLINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGTQSNIR 78
Query: 112 NRVHEWVKGCLNDIVVPVETFQLKNMF-QGVSHNQRFDSDRIPAVVELCWQAG------- 163
+HEW + DI++P++ F L + + ++H QRF RIPAVVELC QAG
Sbjct: 79 KGIHEWTNAHVEDILIPIDAFHLYDRLGKRITHEQRFSIPRIPAVVELCIQAGVKIREFP 138
Query: 164 ------------------AD----PDDKNLCPSKWNLEAANGGVDGTESLSPNDLASIAN 201
AD PD+ P++ L A D ++ ++ +A
Sbjct: 139 TKRRRKPIIRIGKKEFVDADESELPDEVPDNPTQ-PLIAEIPDSDIVAPVNKEEVVHLAE 197
Query: 202 NTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFWIKA 261
TL+AWE +R G +L+ +Y V+VC +C E+HVGPS HKA+ G K + G H W A
Sbjct: 198 ETLQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVGPSGHKAQNCGAHKHQQRNGQHGWQSA 257
Query: 262 NVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK-EQG 320
+D L+PP+ VW + P L E ++FYG+ PA++++C +AGA +P +Y M+ + G
Sbjct: 258 VLDDLIPPRFVWHVPDVNGPPLERELKNFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVG 317
Query: 321 LPG 323
+P
Sbjct: 318 IPS 320
>Medtr5g072520.1 | APO RNA-binding protein | HC |
chr5:30879261-30876789 | 20130731
Length = 442
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 126/282 (44%), Gaps = 51/282 (18%)
Query: 87 FCPEIYIGEQGHLIQTCWGYRHRATNRVHEWVKGCLNDIVVPVETFQLKNMFQG--VSHN 144
FC E++IG GH I+TC G + + H W +G + D+V + F L + V H+
Sbjct: 1 FCNEVHIGYVGHEIRTCTGPKSWLRSATHVWKRGGVQDVVCFPKCFHLYDRVGKPRVGHD 60
Query: 145 QRFDSDRIPAVVELCWQAG----------------------ADPD---DKNLCPSKWNLE 179
+RF RIPA++ELC QAG AD + + N + E
Sbjct: 61 ERFSVPRIPAIIELCIQAGLDLKKFPTKRRTKPVYCIEGRIADFESVAEDNEIERNSSFE 120
Query: 180 AANGGVDGTESLSP------------------------NDLASIANNTLRAWETLRSGVG 215
N D + L N L ++ + L +W + SG
Sbjct: 121 NVNPLTDSSYMLKEPVEKVQSLLENKISHMDQLSDEERNKLRDLSKHALDSWFEMISGAK 180
Query: 216 KLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFWIKANVDHLVPPKIVWRR 275
K++ Y V C +C EV VGP HK R+ K +S G H W +A +D +V P VW
Sbjct: 181 KIMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATLDDIVGPNFVWHV 240
Query: 276 RPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK 317
+ P L N + +YG+ PA+++LC AGA VP +Y MM+
Sbjct: 241 EDLNGPALNNNIKRYYGKAPAVVELCVHAGAPVPDQYKSMMR 282
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 58 VAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRATNRVHEW 117
++K L S +I G ++ + C +CPE+ +G +GH ++ C +H++ N +H W
Sbjct: 164 LSKHALDSWFEMISGAKKIMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAW 223
Query: 118 VKGCLNDIVVPVETFQLKNMFQ-GVSHNQRFDSDRIPAVVELCWQAGADPDDK 169
+ L+DIV P + ++++ +++N + + PAVVELC AGA D+
Sbjct: 224 QEATLDDIVGPNFVWHVEDLNGPALNNNIKRYYGKAPAVVELCVHAGAPVPDQ 276
>Medtr1g054885.1 | photosystem one accumulation protein | HC |
chr1:24065884-24068179 | 20130731
Length = 82
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 254 GAHFWIKANVDHLVPPKIVWRRRPQDP-PVLLNEGRDFYGRVPAILDLCAKAGAIVPAEY 312
G H W +A ++ VPP V+ R Q P L+NE + +YG +PA+++L ++AGA V Y
Sbjct: 4 GQHEWQEATINDFVPPVYVYHIRDQQPGKPLVNELKRYYGMLPAVVELFSQAGAPVEKIY 63
Query: 313 NKMMKEQGLP 322
M++ +P
Sbjct: 64 GHTMRDVVVP 73