Miyakogusa Predicted Gene

Lj3g3v1341620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1341620.1 Non Characterized Hit- tr|I3S2F0|I3S2F0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.09,0,HLH,
helix-loop-helix DNA-binding domain,Helix-loop-helix domain; helix
loop helix domain,Helix-loop,CUFF.42506.1
         (230 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g089000.1 | BHLH domain class transcription factor | HC | ...   233   1e-61
Medtr2g082640.1 | BHLH domain class transcription factor | HC | ...   199   1e-51
Medtr4g081370.1 | BHLH domain class transcription factor | HC | ...   199   2e-51
Medtr4g081370.2 | BHLH domain class transcription factor | HC | ...   192   2e-49
Medtr1g043430.1 | BHLH domain class transcription factor | HC | ...   142   3e-34
Medtr4g075480.2 | transcription factor | HC | chr4:28837847-2884...    74   1e-13
Medtr4g075480.1 | transcription factor | HC | chr4:28837847-2884...    74   1e-13
Medtr4g075480.3 | transcription factor | HC | chr4:28837847-2884...    74   2e-13
Medtr1g032600.1 | transcription factor | HC | chr1:11621022-1162...    66   2e-11
Medtr1g032600.2 | transcription factor | HC | chr1:11621022-1162...    66   2e-11

>Medtr2g089000.1 | BHLH domain class transcription factor | HC |
           chr2:37541705-37539428 | 20130731
          Length = 260

 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/253 (51%), Positives = 157/253 (62%), Gaps = 37/253 (14%)

Query: 13  SCWLYDYGFDDIXXXXX---XXXXXXXXXXXTWVP-------------SNMNLEMEYSLD 56
           S WLYDYG+DDI                   TW+P             S+M+LEM+YSLD
Sbjct: 10  SIWLYDYGYDDISISAADFMASDSSAAASTFTWMPQPQSQTQIINPPSSHMSLEMDYSLD 69

Query: 57  STVFES-------------------GPSKRLRTESSVSGSKACREKLRRDKLNERFLELS 97
           STV ES                   GPSKRLRTES  S SKA REK+RRDKLN+RF+ELS
Sbjct: 70  STVMESNPSKRMEMEYSLDSTVLENGPSKRLRTESYASSSKAGREKVRRDKLNDRFMELS 129

Query: 98  SILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXX 157
           S+LEP   PKTDK ++++DAVRVVTQLRNEAE+LKE N++L+EK+KELKAEK E+     
Sbjct: 130 SVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKKELRDEKN 189

Query: 158 XXXXXXXXXXXXXXXXXXQPGFLPHADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVL 217
                             Q  FL +A AA KG+  A+HKL+P+IGYPGI+MWQFM  A +
Sbjct: 190 KLKLDKEKLEQQVKLASVQSNFLSNAMAA-KGQ-TANHKLMPFIGYPGISMWQFMSPATV 247

Query: 218 DTSRDHLLRPPVA 230
           DTS+DHLLRPPVA
Sbjct: 248 DTSQDHLLRPPVA 260


>Medtr2g082640.1 | BHLH domain class transcription factor | HC |
           chr2:34669163-34671763 | 20130731
          Length = 230

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/230 (50%), Positives = 145/230 (63%), Gaps = 16/230 (6%)

Query: 12  DSCWLYDYGFDDIXXXXXXXXXXXXXXXXTWVP---SNMNLEMEYS--LDS-TVFESGPS 65
           ++ WL+DY   D                 TW P   SN  +EM+ S  +DS  + E G  
Sbjct: 6   NTNWLFDYPLID-----EIPVSVDGSFAFTWPPPHLSNGGIEMDDSSLVDSDGIKEPGSK 60

Query: 66  KRLRTESSV-SGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQL 124
           KR R++S   S SKACREKLRRD+LN++F+EL SILEPGR PKTDKAAI+ DAVR+VTQL
Sbjct: 61  KRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQL 120

Query: 125 RNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXXXXXXXXXXXXXXQPGFLPHA- 183
           R EA+KLK+ N+ LQEKIKELK EKNE+                       QPGFL H  
Sbjct: 121 RGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPGFLTHPP 180

Query: 184 --DAAVKGKG-AASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA 230
              AA   +G A S+KL+P++ YPG+AMWQFMP A +DTS+DH+LRPPVA
Sbjct: 181 AIPAAFAHQGQAPSNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA 230


>Medtr4g081370.1 | BHLH domain class transcription factor | HC |
           chr4:31541350-31537381 | 20130731
          Length = 237

 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/234 (49%), Positives = 147/234 (62%), Gaps = 17/234 (7%)

Query: 12  DSCWLYDYGF-DDIXXXXXXXXXXXXXXXXTW-------VPSNMNLEMEYSLDST--VFE 61
           ++ W+ DYGF DDI                TW       + SN++ E++ SL  +  + E
Sbjct: 6   NTNWINDYGFYDDIPVPDSTFALPSSAF--TWPTQPPFNLSSNVSAEVDGSLGDSDGLKE 63

Query: 62  SGPSKRLRTES-SVSGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRV 120
           SG  KR+R+ES + + SKACREKLRRD+LN++F+EL SILEPGR  KTDKAAI+ DAVR+
Sbjct: 64  SGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRM 123

Query: 121 VTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXXXXXXXXXXXXXXQPGFL 180
           VTQLR EA+KLK+ N+ LQEKIKELK EKNE+                        P FL
Sbjct: 124 VTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFL 183

Query: 181 PHAD---AAVKGKGAA-SHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA 230
           P      AA   +G A  +KL+P+I YPG+AMWQFMP A +DTS+DH+LRPPVA
Sbjct: 184 PTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237


>Medtr4g081370.2 | BHLH domain class transcription factor | HC |
           chr4:31541177-31537807 | 20130731
          Length = 193

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 130/191 (68%), Gaps = 7/191 (3%)

Query: 47  MNLEMEYSLDST--VFESGPSKRLRTES-SVSGSKACREKLRRDKLNERFLELSSILEPG 103
           M  E++ SL  +  + ESG  KR+R+ES + + SKACREKLRRD+LN++F+EL SILEPG
Sbjct: 3   MGAEVDGSLGDSDGLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPG 62

Query: 104 RQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXX 163
           R  KTDKAAI+ DAVR+VTQLR EA+KLK+ N+ LQEKIKELK EKNE+           
Sbjct: 63  RPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEK 122

Query: 164 XXXXXXXXXXXXQPGFLPHAD---AAVKGKGAA-SHKLIPYIGYPGIAMWQFMPSAVLDT 219
                        P FLP      AA   +G A  +KL+P+I YPG+AMWQFMP A +DT
Sbjct: 123 EKLEQQLKSMNAPPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDT 182

Query: 220 SRDHLLRPPVA 230
           S+DH+LRPPVA
Sbjct: 183 SQDHVLRPPVA 193


>Medtr1g043430.1 | BHLH domain class transcription factor | HC |
           chr1:16308113-16312292 | 20130731
          Length = 246

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 105/172 (61%), Gaps = 4/172 (2%)

Query: 61  ESGPSKRLRTESSV-SGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVR 119
           E    KR RTES   +G+KACREKLRR+KLNERF +LS++LEPGR  +TDK AI+ DA+R
Sbjct: 77  EENTRKRGRTESCYKAGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIR 136

Query: 120 VVTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXXXXXXXXXXXXXXQP-G 178
           V++QL+ EA++LKE N  L E+IK LKAEKNE+                        P G
Sbjct: 137 VLSQLKTEAQELKESNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKSMPVSPAG 196

Query: 179 FLPHADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA 230
           F+P    A     A+ +K+  Y  Y  I MW ++P +  DTS+DH LRPP A
Sbjct: 197 FMPPPPMA--AYQASVNKMAVYPNYGYIPMWHYLPQSARDTSQDHELRPPAA 246


>Medtr4g075480.2 | transcription factor | HC |
           chr4:28837847-28840939 | 20130731
          Length = 282

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 78  KACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNND 137
           KA REKLRRD+LNE+FLEL +IL+P R PK DKA I+ D V+++  L ++  KLK+    
Sbjct: 11  KADREKLRRDRLNEQFLELGNILDPDR-PKNDKATILGDTVQLLKDLSSQVSKLKDEYTM 69

Query: 138 LQEKIKELKAEKNEI 152
           L E+ +EL  EKN++
Sbjct: 70  LNEESRELSQEKNDL 84


>Medtr4g075480.1 | transcription factor | HC |
           chr4:28837847-28840939 | 20130731
          Length = 282

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 78  KACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNND 137
           KA REKLRRD+LNE+FLEL +IL+P R PK DKA I+ D V+++  L ++  KLK+    
Sbjct: 11  KADREKLRRDRLNEQFLELGNILDPDR-PKNDKATILGDTVQLLKDLSSQVSKLKDEYTM 69

Query: 138 LQEKIKELKAEKNEI 152
           L E+ +EL  EKN++
Sbjct: 70  LNEESRELSQEKNDL 84


>Medtr4g075480.3 | transcription factor | HC |
           chr4:28837847-28840939 | 20130731
          Length = 310

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 78  KACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNND 137
           KA REKLRRD+LNE+FLEL +IL+P R PK DKA I+ D V+++  L ++  KLK+    
Sbjct: 39  KADREKLRRDRLNEQFLELGNILDPDR-PKNDKATILGDTVQLLKDLSSQVSKLKDEYTM 97

Query: 138 LQEKIKELKAEKNEI 152
           L E+ +EL  EKN++
Sbjct: 98  LNEESRELSQEKNDL 112


>Medtr1g032600.1 | transcription factor | HC |
           chr1:11621022-11623661 | 20130731
          Length = 355

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 78  KACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNND 137
           KA REK+RRD+LN+ F +L ++++P R P+ DKA II++ ++V+  + +E ++LK  +  
Sbjct: 82  KADREKIRRDRLNDHFHQLGTVIDPDR-PRNDKATIITETIQVLKDITSEVDRLKTEHKS 140

Query: 138 LQEKIKELKAEKNEI 152
           L E+ +EL  EK E+
Sbjct: 141 LSEESRELIQEKTEL 155


>Medtr1g032600.2 | transcription factor | HC |
           chr1:11621022-11623661 | 20130731
          Length = 355

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 78  KACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNND 137
           KA REK+RRD+LN+ F +L ++++P R P+ DKA II++ ++V+  + +E ++LK  +  
Sbjct: 82  KADREKIRRDRLNDHFHQLGTVIDPDR-PRNDKATIITETIQVLKDITSEVDRLKTEHKS 140

Query: 138 LQEKIKELKAEKNEI 152
           L E+ +EL  EK E+
Sbjct: 141 LSEESRELIQEKTEL 155