Miyakogusa Predicted Gene

Lj3g3v1340420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1340420.1 tr|A8J251|A8J251_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_191680 PE=4
SV=1,38.06,0.000000000002,seg,NULL,CUFF.42477.1
         (284 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g088850.1 | peroxisome biogenesis-like protein | HC | chr2...   425   e-119
Medtr2g088850.2 | peroxisome biogenesis-like protein | HC | chr2...   425   e-119

>Medtr2g088850.1 | peroxisome biogenesis-like protein | HC |
           chr2:37471318-37466057 | 20130731
          Length = 275

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/269 (79%), Positives = 231/269 (85%), Gaps = 7/269 (2%)

Query: 15  KQQLFHLIKRFGAYVTFKISNLVSLSLHNLDIRSXXXXXXXXXXXXFTWRLLRSPGEPQQ 74
           K  LFHLIKRFGA+VTFKI +L SL     DIR+            FTWRLLRSP   Q 
Sbjct: 13  KLDLFHLIKRFGAFVTFKIGHLFSL-----DIRTIGAVAGLAVAIVFTWRLLRSPNPTQG 67

Query: 75  RQQKRQGASSSNSNPGARAGSIASVVPSEASLPSHDSRAQNVVDEFFQPVKPTLGQIVRQ 134
           RQ+KRQG +SSN  PGA   S ASVVPS+ASLPS + RAQNVVDEFFQPVKPTLGQIVRQ
Sbjct: 68  RQRKRQGGASSN--PGASTNSNASVVPSDASLPSDELRAQNVVDEFFQPVKPTLGQIVRQ 125

Query: 135 KLSEGRKVTCRLLGVVLEETSPEELQKQATVRSSVLEVLLEITKYCDLYLMERVLDDESE 194
           KLSEGRKVTCRLLGV+LEE+SPEELQ +ATVRSSVLEVLLEITK+CDLYLM+RVLDDESE
Sbjct: 126 KLSEGRKVTCRLLGVILEESSPEELQTKATVRSSVLEVLLEITKFCDLYLMDRVLDDESE 185

Query: 195 KRVLVALEEAGVFTSGGLVKDKVLFCSTENGRSSFVRQLEPDWHIDTNPEIVFQLARFIK 254
           KRVLVALEEAGVFTSGGLVKDKVLF STENGRSSFVRQLEPDWHIDTNPEIV QLARFIK
Sbjct: 186 KRVLVALEEAGVFTSGGLVKDKVLFSSTENGRSSFVRQLEPDWHIDTNPEIVTQLARFIK 245

Query: 255 YQLHVSPHKSERTAGNVFSAPALELFFGS 283
           Y+LH++P+K+ERTA NVFSAP+LELFFGS
Sbjct: 246 YELHIAPYKTERTAANVFSAPSLELFFGS 274


>Medtr2g088850.2 | peroxisome biogenesis-like protein | HC |
           chr2:37471302-37460165 | 20130731
          Length = 275

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/269 (79%), Positives = 231/269 (85%), Gaps = 7/269 (2%)

Query: 15  KQQLFHLIKRFGAYVTFKISNLVSLSLHNLDIRSXXXXXXXXXXXXFTWRLLRSPGEPQQ 74
           K  LFHLIKRFGA+VTFKI +L SL     DIR+            FTWRLLRSP   Q 
Sbjct: 13  KLDLFHLIKRFGAFVTFKIGHLFSL-----DIRTIGAVAGLAVAIVFTWRLLRSPNPTQG 67

Query: 75  RQQKRQGASSSNSNPGARAGSIASVVPSEASLPSHDSRAQNVVDEFFQPVKPTLGQIVRQ 134
           RQ+KRQG +SSN  PGA   S ASVVPS+ASLPS + RAQNVVDEFFQPVKPTLGQIVRQ
Sbjct: 68  RQRKRQGGASSN--PGASTNSNASVVPSDASLPSDELRAQNVVDEFFQPVKPTLGQIVRQ 125

Query: 135 KLSEGRKVTCRLLGVVLEETSPEELQKQATVRSSVLEVLLEITKYCDLYLMERVLDDESE 194
           KLSEGRKVTCRLLGV+LEE+SPEELQ +ATVRSSVLEVLLEITK+CDLYLM+RVLDDESE
Sbjct: 126 KLSEGRKVTCRLLGVILEESSPEELQTKATVRSSVLEVLLEITKFCDLYLMDRVLDDESE 185

Query: 195 KRVLVALEEAGVFTSGGLVKDKVLFCSTENGRSSFVRQLEPDWHIDTNPEIVFQLARFIK 254
           KRVLVALEEAGVFTSGGLVKDKVLF STENGRSSFVRQLEPDWHIDTNPEIV QLARFIK
Sbjct: 186 KRVLVALEEAGVFTSGGLVKDKVLFSSTENGRSSFVRQLEPDWHIDTNPEIVTQLARFIK 245

Query: 255 YQLHVSPHKSERTAGNVFSAPALELFFGS 283
           Y+LH++P+K+ERTA NVFSAP+LELFFGS
Sbjct: 246 YELHIAPYKTERTAANVFSAPSLELFFGS 274