Miyakogusa Predicted Gene

Lj3g3v1297070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1297070.1 Non Characterized Hit- tr|E1ZHJ8|E1ZHJ8_CHLVA
Putative uncharacterized protein OS=Chlorella variabil,43.14,9e-18,GB
DEF: HYPOTHETICAL PROTEIN AT2G32590,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; Cnd2,Condensin complex,CUFF.42430.1
         (678 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g087880.1 | condensin complex subunit 2 | HC | chr2:369925...   931   0.0  
Medtr4g050060.1 | condensin complex subunit 2 | HC | chr4:176941...   912   0.0  

>Medtr2g087880.1 | condensin complex subunit 2 | HC |
           chr2:36992549-36998312 | 20130731
          Length = 656

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/665 (70%), Positives = 539/665 (81%), Gaps = 19/665 (2%)

Query: 18  VSPNPTTAAPSKRLPVAARILSPTSPVFIGSNDDQVEXXXXXXXXXXXXXXKSLAAAANF 77
            SPNPTT    KRLP      +P +  F+GSNDDQ+E               ++    NF
Sbjct: 5   ASPNPTTVH-KKRLP------TPATTFFVGSNDDQLERAAARAARA-----AAIRRTVNF 52

Query: 78  PSRDPDSDPCLTKDQILDLFHNCIKLAAENKINQKNTWELKLIDHLTDFIRTEEESDVET 137
            S+  DSDPCL K QIL+LFHNCIKLA+ENKINQKNTW+L LIDHLTD IR E++++ ET
Sbjct: 53  QSQPSDSDPCLNKQQILELFHNCIKLASENKINQKNTWDLDLIDHLTDIIRAEDDNNTET 112

Query: 138 NFQIASCTLEAGVKIYSLRVDSVHSEAYKVLARMNRVGQEAEEDSTLDSVNAEDGHEESK 197
           NFQ+ASCTLEAGVKIYSLRVDSV+SEAYKVLARM+RVGQE E+D+TL SVN E G EESK
Sbjct: 113 NFQMASCTLEAGVKIYSLRVDSVYSEAYKVLARMSRVGQETEQDATLASVNGEGGREESK 172

Query: 198 KGIDKKLSPLSTLESSFEALNVKKFDVAFAVDPLYRHTSAQFDEGGAKGLLMNNLGVYGG 257
           KGIDKKLSPLSTLESSFEALNVKKFDVAFAVDPLYR TSA+FDEGGAKGLLMNNLGVYG 
Sbjct: 173 KGIDKKLSPLSTLESSFEALNVKKFDVAFAVDPLYRKTSAKFDEGGAKGLLMNNLGVYGR 232

Query: 258 CRVLFDSLEVPGKCIASQSEQDISDTIDLSFLRDCIEEMLLNMRMKDEISPTLRVIVNQF 317
           CRVLFDSL+VPGK +ASQ+E D+SDT+DLSF RDC+E+ML +M++K+EISPTLRVIVN  
Sbjct: 233 CRVLFDSLDVPGKYLASQNEHDVSDTVDLSFARDCVEQMLSDMQIKEEISPTLRVIVNIL 292

Query: 318 DENNRRPSDFEFSGQKSAEEFGVDIDCSIAAERGEYENFPSWCNDHDNQTFVAEQGSNDA 377
           DE +RRP DF+ +GQKS++EF   IDC + AE  +YENFP+   +HDNQTFV E GSNDA
Sbjct: 293 DETDRRPFDFQSNGQKSSQEFDAAIDCEVGAEMEDYENFPTGPYEHDNQTFVNEMGSNDA 352

Query: 378 EPSFSSYPQEKEPFPSQDSDMDGNFENVDEYIFLSLGLRSKKNAWAGPDHWKYGKAK--E 435
           +P+  SYPQE+EPFPSQD +MD  F NVDEY+  SLG RSKKNAWAGPDHW+Y KAK  E
Sbjct: 353 DPNVPSYPQEEEPFPSQDLEMDELFGNVDEYLSFSLGFRSKKNAWAGPDHWQYQKAKGSE 412

Query: 436 SVARCTSEDDSTLETRQPRAKRQDEDDLEFTSCLETKFPDIFCPPKNSKSLLLPENRPPC 495
           S   C++ED STL+TR P+  +Q E DL+FT+ L    PDIF PPK+ KSLLL ENRP C
Sbjct: 413 SEVHCSTEDASTLKTRPPKTMKQIEVDLDFTNFLGKTPPDIFAPPKSPKSLLLSENRPHC 472

Query: 496 VTKLPEDCHYEPQDLVKLFLLPNVKCLGRRARKLSG---DVSEEQGNDYESFPSWDNGGV 552
           VTKLPEDCHYEP++LVKLFLLP+VKCLGRR RKLSG   D S EQ N+ E F SWDNG V
Sbjct: 473 VTKLPEDCHYEPENLVKLFLLPDVKCLGRRTRKLSGVYTDGSTEQCNNNEPFNSWDNGSV 532

Query: 553 GDGEYDGDTHSDIDDPSTLISQPRRVNKIEVDYDKTSKQVDVQALKIALWDHIQESIQLH 612
            DGEYD D HSD+DD STLISQ R++NKIEV YDKTSKQVDVQALK+ LW+HI+ES+ L 
Sbjct: 533 CDGEYD-DAHSDMDDSSTLISQARQINKIEVQYDKTSKQVDVQALKLTLWNHIEESVHLR 591

Query: 613 VPGEKETVSFRDMLTNFPS-CNAAATVTDISPHLCFICLLHLANEKGLSIENCPNLDDLS 671
             GEKETVSFRD+L NFPS CNA+ATVTDISPHLCFICLLHLANEK LSI++CP+LDDL 
Sbjct: 592 FQGEKETVSFRDVLANFPSECNASATVTDISPHLCFICLLHLANEKELSIQSCPDLDDLH 651

Query: 672 IYMPT 676
           IYMPT
Sbjct: 652 IYMPT 656


>Medtr4g050060.1 | condensin complex subunit 2 | HC |
           chr4:17694113-17688616 | 20130731
          Length = 666

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/660 (68%), Positives = 529/660 (80%), Gaps = 11/660 (1%)

Query: 24  TAAPSK-RLPVAARILSPTSPVFIGSNDDQVEXXXXXXXXXXXXXXKSLAAAANFPSRDP 82
           T +P+K RLPVAARI SPTSP  +GSNDDQ+E              K+L  +    S + 
Sbjct: 4   TLSPTKHRLPVAARIQSPTSPFILGSNDDQLERAQARAARAAAIRRKNLPVSQ---SLEA 60

Query: 83  DSDPCLTKDQILDLFHNCIKLAAENKINQKNTWELKLIDHLTDFIRTEEESDVETNFQIA 142
           DSDPCL K QI DLF NCIKLA+ENKINQKNTWEL LIDHLTD I+ EEE+D ETNFQ A
Sbjct: 61  DSDPCLNKQQIFDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEEENDTETNFQKA 120

Query: 143 SCTLEAGVKIYSLRVDSVHSEAYKVLARMNRVGQEAEEDSTLDSVNAEDGHEESKKGIDK 202
           SCTLEAGVKIYSLRVDSVHSEAYKVL  MNR GQEAE+D+TL+ VN E+G E S+K  DK
Sbjct: 121 SCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEQDTTLEGVNVENGQEGSRKETDK 180

Query: 203 KLSPLSTLESSFEALNVKKFDVAFAVDPLYRHTSAQFDEGGAKGLLMNNLGVYGGCRVLF 262
           KLSPLSTLESSFE LNVKKFD AF VDPLYR T+A+FDEGGAKGLLMNNLGVYGGCR+LF
Sbjct: 181 KLSPLSTLESSFEVLNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCRLLF 240

Query: 263 DSLEVPGKCIASQSEQDISDTIDLSFLRDCIEEMLLNMRMKDEISPTLRVIVNQFDENNR 322
           DSLEVP KC+ SQ+E DISDTIDLSF RDC+EE++L MR+KDEISPTLR IVNQFDENN+
Sbjct: 241 DSLEVPAKCMESQNEPDISDTIDLSFARDCVEEIVLEMRVKDEISPTLRTIVNQFDENNK 300

Query: 323 RPSDFEFSGQKSAEEFGVDIDCSIAAERGEYENFPSWCNDHDNQTFVAEQGSNDAEPSFS 382
           RP+ F+  GQ SAEE   D +C   A+R EY+N  +W +DHD+Q  +A+ GSNDA+PSFS
Sbjct: 301 RPTGFQLPGQNSAEELDADFNCENGADREEYDNGATWSDDHDDQPVIADLGSNDADPSFS 360

Query: 383 SYPQEKEPFPSQDSDMDGNFENVDEYIFLSLGLRSKKNAWAGPDHWKYGKAKESVARCTS 442
           SYPQE E FPS DSDMD  FENVD ++FLSLG  SK NAWAGPDHWKY K+K S  + TS
Sbjct: 361 SYPQENEQFPSTDSDMDDRFENVDGFLFLSLGFNSKHNAWAGPDHWKYKKSKVSEVQPTS 420

Query: 443 EDDSTLETRQPRAKRQDEDDLEFTSCLETKFPDIFCPPKNSKSLLLPENRPPCVTKLPED 502
           ED STL+ RQ ++K+Q E DL+FT+ LE    DIF PPKN K+LLLPE+R PC TKLPED
Sbjct: 421 EDGSTLKPRQTKSKKQAEVDLDFTNSLEKDLSDIFAPPKNPKTLLLPESRSPCNTKLPED 480

Query: 503 CHYEPQDLVKLFLLPNVKCLGRRARKLS-GDVSEEQGNDYESFPSWDNGGV-GD---GEY 557
           CHY+P++LVKLFLLP+VKCLGRRA++ S  D S +Q N+ + FPSWDNG   GD   G+Y
Sbjct: 481 CHYQPEELVKLFLLPDVKCLGRRAKRFSDADGSRDQFNENDPFPSWDNGSACGDDEAGDY 540

Query: 558 DGDTHSDIDDPSTLISQPRRVNKIEVDYDKTSKQVDVQALKIALWDHIQESIQLH-VPGE 616
           +GD HSDI+DP TLI+QPR+V+KIEV YDKTSKQVDVQ LK+ LWDH+QES++L  V  +
Sbjct: 541 EGDHHSDIEDPGTLITQPRQVSKIEVQYDKTSKQVDVQVLKVTLWDHVQESVKLSPVQDQ 600

Query: 617 KETVSFRDMLTNFPS-CNAAATVTDISPHLCFICLLHLANEKGLSIENCPNLDDLSIYMP 675
           +E VSF+++L NFP  CNAAA ++DISPHLCFICLLHLANEKGLSI++ PNLDDLSI +P
Sbjct: 601 EEIVSFKNLLANFPGECNAAANISDISPHLCFICLLHLANEKGLSIQSFPNLDDLSICLP 660