Miyakogusa Predicted Gene
- Lj3g3v1296990.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1296990.1 tr|F2CPY5|F2CPY5_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,77.59,9e-18,RING/U-box,NULL; zf-RING_2,Zinc finger, RING-type;
ZF_RING_2,Zinc finger, RING-type; no description,,CUFF.42419.1
(275 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g087820.1 | E3 ubiquitin-protein ligase RHF2A-like protein... 374 e-104
Medtr2g087820.2 | E3 ubiquitin-protein ligase RHF2A-like protein... 372 e-103
Medtr7g106770.1 | E3 ubiquitin-protein ligase RHF2A-like protein... 217 1e-56
Medtr2g022680.2 | E3 ubiquitin-protein ligase RHF2A, putative | ... 123 2e-28
Medtr2g022680.1 | E3 ubiquitin-protein ligase RHF2A, putative | ... 122 3e-28
Medtr2g022680.3 | E3 ubiquitin-protein ligase RHF2A, putative | ... 99 3e-21
Medtr7g016840.2 | RING-finger ubiquitin ligase | HC | chr7:53203... 65 1e-10
Medtr7g016840.1 | RING-finger ubiquitin ligase | HC | chr7:53196... 65 1e-10
Medtr6g015980.1 | RING-finger ubiquitin ligase | HC | chr6:56670... 60 2e-09
Medtr8g030510.1 | anaphase-promoting complex subunit 11 RING-H2 ... 60 2e-09
Medtr8g030510.2 | anaphase-promoting complex subunit 11 RING-H2 ... 60 2e-09
Medtr8g098665.2 | anaphase-promoting complex subunit 11 RING-H2 ... 59 5e-09
Medtr8g098665.1 | anaphase-promoting complex subunit 11 RING-H2 ... 59 5e-09
Medtr5g046970.1 | anaphase-promoting complex subunit 11 RING-H2 ... 54 1e-07
Medtr6g087150.1 | RING-H2 finger protein ATL4J | HC | chr6:33511... 54 2e-07
Medtr4g080750.1 | anaphase-promoting complex subunit 11 RING-H2 ... 54 2e-07
Medtr2g076290.1 | zinc finger, C3HC4 type (RING finger) protein ... 52 6e-07
Medtr1g114240.2 | RING-finger ubiquitin ligase | HC | chr1:51552... 52 9e-07
Medtr1g114240.1 | RING-finger ubiquitin ligase | HC | chr1:51552... 52 9e-07
Medtr6g048000.1 | anaphase-promoting complex subunit 11 RING-H2 ... 51 1e-06
Medtr3g025940.1 | zinc finger, C3HC4 type (RING finger) protein ... 51 2e-06
Medtr3g083480.2 | zinc finger, C3HC4 type (RING finger) protein ... 49 4e-06
Medtr3g083480.1 | zinc finger, C3HC4 type (RING finger) protein ... 49 4e-06
Medtr2g078440.1 | zinc finger, C3HC4 type (RING finger) protein ... 49 4e-06
Medtr2g078450.1 | zinc finger, C3HC4 type (RING finger) protein ... 49 5e-06
Medtr2g078450.2 | zinc finger, C3HC4 type (RING finger) protein ... 49 5e-06
Medtr7g076250.1 | zinc finger, C3HC4 type (RING finger) protein ... 49 5e-06
Medtr5g016940.1 | zinc finger, C3HC4 type (RING finger) protein ... 49 6e-06
Medtr5g079050.1 | zinc finger, C3HC4 type (RING finger) protein ... 49 6e-06
Medtr1g070140.1 | RING-H2 zinc finger protein | HC | chr1:308110... 49 7e-06
Medtr5g078900.1 | zinc finger, C3HC4 type (RING finger) protein ... 48 8e-06
Medtr5g066250.1 | RING-H2 zinc finger protein | LC | chr5:279404... 48 1e-05
>Medtr2g087820.1 | E3 ubiquitin-protein ligase RHF2A-like protein |
HC | chr2:36962423-36958700 | 20130731
Length = 382
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/254 (72%), Positives = 196/254 (77%), Gaps = 12/254 (4%)
Query: 2 EVPVMEENETTKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHL 61
EVPV+EENET KSEAHLTSAAAFVEGGIQDACDD+CSICLE+F DS+PSTVT CKHEFHL
Sbjct: 3 EVPVIEENET-KSEAHLTSAAAFVEGGIQDACDDSCSICLEEFIDSDPSTVTSCKHEFHL 61
Query: 62 QCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNVRFNPSRNAAIFHHPTLGDFE 121
QCILEWCQRSSQCPMCWQ ISLKDPT QELLEAVERERN+RFNP+RNA IFHHPTLGDFE
Sbjct: 62 QCILEWCQRSSQCPMCWQSISLKDPTGQELLEAVERERNIRFNPTRNATIFHHPTLGDFE 121
Query: 122 LQHLPVGANDADLEERIIQHLXXXXXXXXXXXXXXXEGQRNRSSAQGRPQFLVFSTHXXX 181
LQHLPVGANDADLEERI+QH EGQRNRSSAQGRPQ++VFS H
Sbjct: 122 LQHLPVGANDADLEERILQHFAAAAAMGRARHIARREGQRNRSSAQGRPQYMVFSAHPNS 181
Query: 182 XXXXXXXXXLNQRGDGEPAPAVAVATLSQTPATGEESPQLTLVPPVQADQVPVLGSGSAA 241
QRGDGE QTPATGEE PQLTLVPPVQ DQV GSGSAA
Sbjct: 182 PPMAPASSSPPQRGDGE-----------QTPATGEEPPQLTLVPPVQTDQVSASGSGSAA 230
Query: 242 LVADNQGSSYINRQ 255
L DN G SY +R+
Sbjct: 231 LATDNLGLSYNSRR 244
>Medtr2g087820.2 | E3 ubiquitin-protein ligase RHF2A-like protein |
HC | chr2:36962365-36958768 | 20130731
Length = 383
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/250 (73%), Positives = 193/250 (77%), Gaps = 12/250 (4%)
Query: 2 EVPVMEENETTKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHL 61
EVPV+EENET KSEAHLTSAAAFVEGGIQDACDD+CSICLE+F DS+PSTVT CKHEFHL
Sbjct: 3 EVPVIEENET-KSEAHLTSAAAFVEGGIQDACDDSCSICLEEFIDSDPSTVTSCKHEFHL 61
Query: 62 QCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNVRFNPSRNAAIFHHPTLGDFE 121
QCILEWCQRSSQCPMCWQ ISLKDPT QELLEAVERERN+RFNP+RNA IFHHPTLGDFE
Sbjct: 62 QCILEWCQRSSQCPMCWQSISLKDPTGQELLEAVERERNIRFNPTRNATIFHHPTLGDFE 121
Query: 122 LQHLPVGANDADLEERIIQHLXXXXXXXXXXXXXXXEGQRNRSSAQGRPQFLVFSTHXXX 181
LQHLPVGANDADLEERI+QH EGQRNRSSAQGRPQ++VFS H
Sbjct: 122 LQHLPVGANDADLEERILQHFAAAAAMGRARHIARREGQRNRSSAQGRPQYMVFSAHPNS 181
Query: 182 XXXXXXXXXLNQRGDGEPAPAVAVATLSQTPATGEESPQLTLVPPVQADQVPVLGSGSAA 241
QRGDGE QTPATGEE PQLTLVPPVQ DQV GSGSAA
Sbjct: 182 PPMAPASSSPPQRGDGE-----------QTPATGEEPPQLTLVPPVQTDQVSASGSGSAA 230
Query: 242 LVADNQGSSY 251
L DN G SY
Sbjct: 231 LATDNLGLSY 240
>Medtr7g106770.1 | E3 ubiquitin-protein ligase RHF2A-like protein |
HC | chr7:43487788-43486082 | 20130731
Length = 290
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 117/162 (72%)
Query: 12 TKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRS 71
T +E H+TSAAAFVEGGIQ++CDDAC ICLE+FCD++PST T C+HEFHLQC+LEW QRS
Sbjct: 9 TNAENHMTSAAAFVEGGIQESCDDACCICLEEFCDNDPSTATACRHEFHLQCVLEWGQRS 68
Query: 72 SQCPMCWQPISLKDPTSQELLEAVERERNVRFNPSRNAAIFHHPTLGDFELQHLPVGAND 131
SQCPMCWQPISLKDPT QEL EAVE+ER R PSRN IFH PTLG F QHL +G N
Sbjct: 69 SQCPMCWQPISLKDPTGQELFEAVEQERKWRVTPSRNIDIFHSPTLGGFGFQHLHMGVNG 128
Query: 132 ADLEERIIQHLXXXXXXXXXXXXXXXEGQRNRSSAQGRPQFL 173
+ LEER++Q+L EGQ+ R S R L
Sbjct: 129 SSLEERLLQNLAIVASIGRTHHVGRREGQQIRPSGHEREDNL 170
>Medtr2g022680.2 | E3 ubiquitin-protein ligase RHF2A, putative | HC
| chr2:7872684-7868741 | 20130731
Length = 388
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 90/153 (58%), Gaps = 22/153 (14%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLE 93
+D+CSICLE F +PSTVT CKHE+HL CILEW QRS +CP+CWQ +SLKDP QELL+
Sbjct: 35 EDSCSICLESFSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLD 94
Query: 94 AVERERNVRFNPSRNAAIFHHPTLGDFELQHLPVG---------ANDADLEERIIQHLXX 144
AVE E+++R SRN H P+L + +P G +++ D +E I+QHL
Sbjct: 95 AVEAEKSLR---SRNN---HSPSLAN---SRVPFGYSNGDHDDSSDEIDFDEEIMQHLYA 145
Query: 145 XXXXXXXXXXXXXEGQRNRSSAQGRPQFLVFST 177
+G SS G + LVF++
Sbjct: 146 AASRARFVQRQRRQG----SSGAGPSEILVFNS 174
>Medtr2g022680.1 | E3 ubiquitin-protein ligase RHF2A, putative | HC
| chr2:7872724-7868674 | 20130731
Length = 381
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 90/153 (58%), Gaps = 22/153 (14%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLE 93
+D+CSICLE F +PSTVT CKHE+HL CILEW QRS +CP+CWQ +SLKDP QELL+
Sbjct: 35 EDSCSICLESFSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLD 94
Query: 94 AVERERNVRFNPSRNAAIFHHPTLGDFELQHLPVG---------ANDADLEERIIQHLXX 144
AVE E+++R SRN H P+L + +P G +++ D +E I+QHL
Sbjct: 95 AVEAEKSLR---SRNN---HSPSLAN---SRVPFGYSNGDHDDSSDEIDFDEEIMQHLYA 145
Query: 145 XXXXXXXXXXXXXEGQRNRSSAQGRPQFLVFST 177
+G SS G + LVF++
Sbjct: 146 AASRARFVQRQRRQG----SSGAGPSEILVFNS 174
>Medtr2g022680.3 | E3 ubiquitin-protein ligase RHF2A, putative | HC
| chr2:7872724-7868698 | 20130731
Length = 336
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 22/135 (16%)
Query: 52 VTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNVRFNPSRNAAI 111
VT CKHE+HL CILEW QRS +CP+CWQ +SLKDP QELL+AVE E+++R SRN
Sbjct: 8 VTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLDAVEAEKSLR---SRNN-- 62
Query: 112 FHHPTLGDFELQHLPVG---------ANDADLEERIIQHLXXXXXXXXXXXXXXXEGQRN 162
H P+L + +P G +++ D +E I+QHL +G
Sbjct: 63 -HSPSLAN---SRVPFGYSNGDHDDSSDEIDFDEEIMQHLYAAASRARFVQRQRRQG--- 115
Query: 163 RSSAQGRPQFLVFST 177
SS G + LVF++
Sbjct: 116 -SSGAGPSEILVFNS 129
>Medtr7g016840.2 | RING-finger ubiquitin ligase | HC |
chr7:5320372-5324813 | 20130731
Length = 227
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 14 SEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQ 73
S A LT+ AA V ++ +D C CLE++ + P VT C H +HL CI EW +RS
Sbjct: 156 SSAKLTTGAALVYASSEE--EDVCPTCLEEYTEENPKIVTKCNHHYHLGCIYEWMERSDS 213
Query: 74 CPMC 77
CP+C
Sbjct: 214 CPVC 217
>Medtr7g016840.1 | RING-finger ubiquitin ligase | HC |
chr7:5319678-5324820 | 20130731
Length = 227
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 14 SEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQ 73
S A LT+ AA V ++ +D C CLE++ + P VT C H +HL CI EW +RS
Sbjct: 156 SSAKLTTGAALVYASSEE--EDVCPTCLEEYTEENPKIVTKCNHHYHLGCIYEWMERSDS 213
Query: 74 CPMC 77
CP+C
Sbjct: 214 CPVC 217
>Medtr6g015980.1 | RING-finger ubiquitin ligase | HC |
chr6:5667096-5661021 | 20130731
Length = 229
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 14 SEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQ 73
S A T+ + +D +D C CLE++ P +T C H FHL CI EW +RS
Sbjct: 156 SSAKYTTGVGLIYASSED--EDICPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDN 213
Query: 74 CPMCWQPISLKDPT 87
CP+C + + + T
Sbjct: 214 CPVCGKEMDFDETT 227
>Medtr8g030510.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr8:11202384-11208450 | 20130731
Length = 191
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQ 79
+D C ICLE++ P T++ C+H FHL CILEW +RS CP+C Q
Sbjct: 137 EDGCPICLEEYDVENPKTLSKCEHHFHLACILEWMERSDSCPICDQ 182
>Medtr8g030510.2 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr8:11202384-11208450 | 20130731
Length = 191
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQ 79
+D C ICLE++ P T++ C+H FHL CILEW +RS CP+C Q
Sbjct: 137 EDGCPICLEEYDVENPKTLSKCEHHFHLACILEWMERSDSCPICDQ 182
>Medtr8g098665.2 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr8:41188446-41185266 | 20130731
Length = 207
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQ 79
+D C ICLE++ P T C H+FHL CILEW +RS CP+C Q
Sbjct: 153 EDTCPICLEEYDAENPKLTTQCGHDFHLACILEWMERSETCPVCDQ 198
>Medtr8g098665.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr8:41188349-41185397 | 20130731
Length = 207
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQ 79
+D C ICLE++ P T C H+FHL CILEW +RS CP+C Q
Sbjct: 153 EDTCPICLEEYDAENPKLTTQCGHDFHLACILEWMERSETCPVCDQ 198
>Medtr5g046970.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | LC | chr5:20590994-20589496 | 20130731
Length = 160
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 35 DACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLK 84
D C IC ED+ D P T C H +HL CI EW S CP+C Q +L+
Sbjct: 82 DNCLICFEDYTDENPKIATRCCHHYHLSCIYEWMSMSKTCPVCRQVRNLQ 131
>Medtr6g087150.1 | RING-H2 finger protein ATL4J | HC |
chr6:33511896-33513722 | 20130731
Length = 376
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 37 CSICLEDFCDSEPSTVT-GCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPT----SQEL 91
CSICL F D E + CKH FH+ CI W ++ S CP+C ++++D T S L
Sbjct: 119 CSICLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDQTTFAYSNSL 178
Query: 92 LEAVERERNV 101
V E N+
Sbjct: 179 RMLVSEESNI 188
>Medtr4g080750.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr4:31202353-31200442 | 20130731
Length = 276
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 20 SAAAFVEGGIQDACDDA--CSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
+AA ++ +++ +D C+ICLEDF E +T C H FH CI+ W QCP+C
Sbjct: 166 NAANDLKESVKEKTEDGMRCAICLEDFEAKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVC 225
>Medtr2g076290.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr2:31952399-31950543 | 20130731
Length = 336
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 35 DACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
D+C+IC +F D E + CKHE+H++CI W ++CP+C
Sbjct: 282 DSCTICQTEFEDHEKIGILQCKHEYHVECIQNWLVIKNECPIC 324
>Medtr1g114240.2 | RING-finger ubiquitin ligase | HC |
chr1:51552982-51559455 | 20130731
Length = 339
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 24 FVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPIS 82
+ G Q +D+C IC D+ D E TV CKH +H +CI W + + CP+C +S
Sbjct: 275 YKAGSDQLGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVS 333
>Medtr1g114240.1 | RING-finger ubiquitin ligase | HC |
chr1:51552982-51559455 | 20130731
Length = 333
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 24 FVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPIS 82
+ G Q +D+C IC D+ D E TV CKH +H +CI W + + CP+C +S
Sbjct: 269 YKAGSDQLGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVS 327
>Medtr6g048000.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | LC | chr6:17313323-17312985 | 20130731
Length = 112
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 34 DDACSICLEDFCDSEPSTVTG------------CKHEFHLQCILEWCQRSSQCPMCWQPI 81
DD CSIC+EDF +S S V G C H +H CI EW R + CP+C I
Sbjct: 51 DDVCSICMEDFEESHNSEVGGNSLFRVSNRRVPCGHVYHSNCIAEWLDRCNSCPLCRHHI 110
Query: 82 S 82
S
Sbjct: 111 S 111
>Medtr3g025940.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr3:7918725-7915603 | 20130731
Length = 454
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
+ C+IC EDF D E C H +HL CI +W + + CP+C
Sbjct: 397 NQTCTICQEDFVDGESIGRLNCIHVYHLHCIKQWLEMRNACPIC 440
>Medtr3g083480.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:37658587-37660828 | 20130731
Length = 356
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 37 CSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 86
CS+CL+DF + CKH FH CIL W + S CP+C + + +P
Sbjct: 237 CSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDEP 286
>Medtr3g083480.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:37658323-37660828 | 20130731
Length = 356
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 37 CSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 86
CS+CL+DF + CKH FH CIL W + S CP+C + + +P
Sbjct: 237 CSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDEP 286
>Medtr2g078440.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr2:32685859-32684289 | 20130731
Length = 327
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 35 DACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
DAC IC E+F E + CKH +H+ CI++W + CP+C
Sbjct: 251 DACMICQEEFKIQEKIGILQCKHGYHVDCIIKWLMIKNICPIC 293
>Medtr2g078450.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:32697439-32693328 | 20130731
Length = 523
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 13 KSEAHLTSAA--AFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQR 70
KS+ + T A E D D+C IC E+F + E + C+HE+H +C+ +W
Sbjct: 445 KSKVYSTKATDINLEEAASDDQESDSCIICQEEFKNKEKIGILRCEHEYHAECLTKWLLV 504
Query: 71 SSQCPMC 77
+ CP+C
Sbjct: 505 KNVCPIC 511
>Medtr2g078450.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:32697401-32693397 | 20130731
Length = 523
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 13 KSEAHLTSAA--AFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQR 70
KS+ + T A E D D+C IC E+F + E + C+HE+H +C+ +W
Sbjct: 445 KSKVYSTKATDINLEEAASDDQESDSCIICQEEFKNKEKIGILRCEHEYHAECLTKWLLV 504
Query: 71 SSQCPMC 77
+ CP+C
Sbjct: 505 KNVCPIC 511
>Medtr7g076250.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:28690325-28692777 | 20130731
Length = 190
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 34 DDACSICLEDFCDSEPSTVT-GCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPT----- 87
D C ICL D+ + E + C H FHL CI W ++ S CP+C P+ T
Sbjct: 87 DTQCVICLADYKEREILRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRP 146
Query: 88 -----SQELLE--AVERERNVRFNPSRNAAIFHHPTLGDFE 121
SQ L E A ER ++ + NAA PT G+ E
Sbjct: 147 VTFTMSQPLDESHASERNTDIERHGETNAANSIQPTSGESE 187
>Medtr5g016940.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr5:6125789-6128429 | 20130731
Length = 348
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISL 83
+ C+IC ED+ D E C H +HL CI +W + + CP C +P +
Sbjct: 296 NQTCTICQEDYIDGEHIGRLHCTHIYHLDCIKQWFEVKNACPFCKKPTRI 345
>Medtr5g079050.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr5:33803352-33800426 | 20130731
Length = 372
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
+ C+IC EDF D E C H +HL CI +W + + CP+C
Sbjct: 310 NQTCTICQEDFIDGECIGRLDCNHIYHLNCIKQWLEEKNVCPIC 353
>Medtr1g070140.1 | RING-H2 zinc finger protein | HC |
chr1:30811056-30812078 | 20130731
Length = 340
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 24 FVEGGIQDACDDACSICLEDFCDSEPSTVT-GCKHEFHLQCILEWCQRSSQCPMCWQPIS 82
F++G +D C +CL +F + + + C H FHL CI W Q +S CP+C IS
Sbjct: 117 FIKGECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSIS 176
Query: 83 LKDPTSQ 89
+Q
Sbjct: 177 GNTTNTQ 183
>Medtr5g078900.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr5:33731973-33729291 | 20130731
Length = 378
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 34 DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
+ C+IC EDF D E C H +HL CI +W + + CP+C
Sbjct: 310 NQTCTICQEDFIDGECIGRFDCNHIYHLNCIKQWLEEKNVCPIC 353
>Medtr5g066250.1 | RING-H2 zinc finger protein | LC |
chr5:27940400-27939099 | 20130731
Length = 433
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 37 CSICLEDFCDSEP-STVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKD-------PTS 88
C++CL F D + + CKH FH++C+ W S CP+C ++ D T
Sbjct: 160 CAVCLNGFEDPDVLRLLPKCKHAFHMECVDMWLDEHSSCPLCRYKVNPDDIVLPQRQNTE 219
Query: 89 QELLEA-VERERNVRFN 104
+ELL + +ER NV N
Sbjct: 220 EELLSSNIERGNNVNDN 236