Miyakogusa Predicted Gene

Lj3g3v1296960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1296960.1 tr|G7IU49|G7IU49_MEDTR DDB1-and CUL4-associated
factor OS=Medicago truncatula GN=MTR_2g093200 PE=4 S,59.76,0,WD40
repeats,WD40 repeat; SUBFAMILY NOT NAMED,NULL; WD REPEAT
DOMAIN-CONTAINING FAMILY,NULL; seg,NUL,CUFF.42413.1
         (248 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g093200.1 | transducin/WD-like repeat-protein | HC | chr2:...   265   2e-71
Medtr1g113000.1 | transducin/WD-like repeat-protein | HC | chr1:...   225   3e-59
Medtr1g113000.3 | transducin/WD-like repeat-protein | HC | chr1:...   224   6e-59
Medtr1g113000.2 | transducin/WD-like repeat-protein | HC | chr1:...   224   6e-59
Medtr3g100690.1 | transducin/WD-like repeat-protein | HC | chr3:...    56   3e-08

>Medtr2g093200.1 | transducin/WD-like repeat-protein | HC |
           chr2:39711113-39707415 | 20130731
          Length = 478

 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 138/251 (54%), Positives = 162/251 (64%), Gaps = 26/251 (10%)

Query: 1   MLGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSI 60
           MLGKH+GSV+KL VEPGSPH  YSCGEDGF+ HFDLR++SATKLF C S    K   P  
Sbjct: 135 MLGKHQGSVYKLAVEPGSPHIFYSCGEDGFIHHFDLRSNSATKLFCCSSTKGNKKQPPGK 194

Query: 61  IELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYR 120
           I LNSI ID R P+Y +VGGS EYAR+YDIR+C W   +  SD+P+ T FCPHHLIGS  
Sbjct: 195 IGLNSIVIDSRIPYYFSVGGSDEYARVYDIRKCHWA-ASKDSDQPVNT-FCPHHLIGSKN 252

Query: 121 IHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWVYPRYRNK 180
           +HITG+A                YLFE+N+   S PSSA C D           P+    
Sbjct: 253 VHITGLAYSKSSELLVSYNDDLIYLFEKNSSFDSLPSSAACED-----------PK---- 297

Query: 181 GTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLMA 240
                 ++   QVY GH+N   +KGV+FFGPNDEYV+SGSDCGHIFIW KK AKLVRLM 
Sbjct: 298 ------NLQETQVYSGHRNAKTVKGVSFFGPNDEYVLSGSDCGHIFIWSKKEAKLVRLMV 351

Query: 241 DD---VNQLAS 248
            D   VNQL +
Sbjct: 352 GDRHVVNQLEA 362


>Medtr1g113000.1 | transducin/WD-like repeat-protein | HC |
           chr1:51268763-51264805 | 20130731
          Length = 497

 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 149/243 (61%), Gaps = 4/243 (1%)

Query: 1   MLGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSI 60
           +LGKH+G   KL +EPGSPH  Y+CGEDG VQHFDLRT +AT+LF C        Y P +
Sbjct: 137 LLGKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTATELFTCKPLKDSWNYMP-V 195

Query: 61  IELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYR 120
           I LN+IAIDPRNP+  AV GS EY RL+DIR+ +W D +    +P + YFCP HLIG  R
Sbjct: 196 IHLNAIAIDPRNPNLFAVAGSDEYTRLFDIRKYKW-DASTDFGQPTD-YFCPPHLIGDER 253

Query: 121 IHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSP-SSAKCHDDLDNVDAAWVYPRYRN 179
           + ITG+A                YLF ++  LG  P   +    D D  +A   +   R+
Sbjct: 254 VGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGLDPVPGSPISVDSDTSEAGGSHGSARS 313

Query: 180 KGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLM 239
               D +   A QV++GH+N   +KGVNFFGPN EYV+SGSDCG IF WKKK  +L+R+M
Sbjct: 314 PSNTDADVKIAPQVFKGHRNCETVKGVNFFGPNCEYVVSGSDCGRIFTWKKKGGELIRVM 373

Query: 240 ADD 242
             D
Sbjct: 374 EAD 376


>Medtr1g113000.3 | transducin/WD-like repeat-protein | HC |
           chr1:51268763-51264805 | 20130731
          Length = 529

 Score =  224 bits (571), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 149/243 (61%), Gaps = 4/243 (1%)

Query: 1   MLGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSI 60
           +LGKH+G   KL +EPGSPH  Y+CGEDG VQHFDLRT +AT+LF C        Y P +
Sbjct: 137 LLGKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTATELFTCKPLKDSWNYMP-V 195

Query: 61  IELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYR 120
           I LN+IAIDPRNP+  AV GS EY RL+DIR+ +W D +    +P + YFCP HLIG  R
Sbjct: 196 IHLNAIAIDPRNPNLFAVAGSDEYTRLFDIRKYKW-DASTDFGQPTD-YFCPPHLIGDER 253

Query: 121 IHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSP-SSAKCHDDLDNVDAAWVYPRYRN 179
           + ITG+A                YLF ++  LG  P   +    D D  +A   +   R+
Sbjct: 254 VGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGLDPVPGSPISVDSDTSEAGGSHGSARS 313

Query: 180 KGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLM 239
               D +   A QV++GH+N   +KGVNFFGPN EYV+SGSDCG IF WKKK  +L+R+M
Sbjct: 314 PSNTDADVKIAPQVFKGHRNCETVKGVNFFGPNCEYVVSGSDCGRIFTWKKKGGELIRVM 373

Query: 240 ADD 242
             D
Sbjct: 374 EAD 376


>Medtr1g113000.2 | transducin/WD-like repeat-protein | HC |
           chr1:51268753-51264899 | 20130731
          Length = 501

 Score =  224 bits (571), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 149/243 (61%), Gaps = 4/243 (1%)

Query: 1   MLGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSI 60
           +LGKH+G   KL +EPGSPH  Y+CGEDG VQHFDLRT +AT+LF C        Y P +
Sbjct: 137 LLGKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTATELFTCKPLKDSWNYMP-V 195

Query: 61  IELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYR 120
           I LN+IAIDPRNP+  AV GS EY RL+DIR+ +W D +    +P + YFCP HLIG  R
Sbjct: 196 IHLNAIAIDPRNPNLFAVAGSDEYTRLFDIRKYKW-DASTDFGQPTD-YFCPPHLIGDER 253

Query: 121 IHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSP-SSAKCHDDLDNVDAAWVYPRYRN 179
           + ITG+A                YLF ++  LG  P   +    D D  +A   +   R+
Sbjct: 254 VGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGLDPVPGSPISVDSDTSEAGGSHGSARS 313

Query: 180 KGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLM 239
               D +   A QV++GH+N   +KGVNFFGPN EYV+SGSDCG IF WKKK  +L+R+M
Sbjct: 314 PSNTDADVKIAPQVFKGHRNCETVKGVNFFGPNCEYVVSGSDCGRIFTWKKKGGELIRVM 373

Query: 240 ADD 242
             D
Sbjct: 374 EAD 376


>Medtr3g100690.1 | transducin/WD-like repeat-protein | HC |
           chr3:46335782-46323405 | 20130731
          Length = 759

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 26/142 (18%)

Query: 5   HEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSA-----TKLFRCYSRI------SK 53
           H   V KL VE G+P+ ++S  EDG ++  D R  ++     +    C++ +      +K
Sbjct: 146 HTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSPRQECHNVLLDLRNGAK 205

Query: 54  KMYG---PSIIELNSIAIDPRNPHYIAVGGSAEYARLYDIR------RCQWRDLALKSDR 104
           +  G     ++ L S  I    PH + VGGS  +ARLYD R       C  R        
Sbjct: 206 RSLGDPPKQVLALKSFDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCGKR----MPPP 261

Query: 105 PLETYFCPHHLI--GSYRIHIT 124
           P   YFCP HL   G   +H+T
Sbjct: 262 PCVNYFCPMHLSDRGHPSLHLT 283



 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 188 VGAAQVYEGHKNTGA-IKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLMADD 242
           +   Q + GH N G  IK  NF G   EYV SGSD G  FIW+K+  +L++L++ D
Sbjct: 607 IDMKQRFIGHCNVGTDIKQANFLGQKGEYVASGSDDGRWFIWEKRTGRLMKLLSGD 662