Miyakogusa Predicted Gene

Lj3g3v1295850.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1295850.1 tr|Q55GJ4|Q55GJ4_DICDI Sec20 family protein
OS=Dictyostelium discoideum GN=sec20 PE=4
SV=1,31.48,3e-16,Sec20,Sec20; SUBFAMILY NOT NAMED,NULL;
BNIP1-RELATED,NULL; seg,NULL,CUFF.42411.1
         (292 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g028660.1 | vesicle transporter Sec20, putative | HC | chr...   429   e-120
Medtr2g028660.2 | vesicle transporter Sec20, putative | HC | chr...   417   e-117

>Medtr2g028660.1 | vesicle transporter Sec20, putative | HC |
           chr2:10627176-10632598 | 20130731
          Length = 292

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/292 (74%), Positives = 239/292 (81%)

Query: 1   MDXXXXXXXXXXREWDEACGKTQLHIKAIADYGKSGRPKDEINSLARLNGMAQDGXXXXX 60
           MD          +EW+E C KTQ HI AI +YGKSGR KDE NSLARLNG+AQDG     
Sbjct: 1   MDKVVEEVERVKKEWNETCIKTQDHINAIGEYGKSGRSKDEKNSLARLNGIAQDGLALLS 60

Query: 61  XXXXXXXXXXPQLPTEKEVESARVLLESWKTLSQHLRLSLRNANLQAKANLRKAAQXXXX 120
                     PQLPT++EV+SAR LL+SWKTL+Q+LR+SLRNANLQAKANLRKAAQ    
Sbjct: 61  SLHFNLDLLAPQLPTQQEVDSARQLLQSWKTLTQNLRISLRNANLQAKANLRKAAQEERE 120

Query: 121 XXXXXXXXSTIRRRNLQTKAGMTSAAESITDSLRRTRQLMVQEVERNTSTLMTLDESTGV 180
                   ST+RRRNLQTKAGMTSAAESIT+SLRRTRQLMVQEVERNTSTLMTLDESTGV
Sbjct: 121 LLLGGGEESTVRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNTSTLMTLDESTGV 180

Query: 181 LKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVIIGLGFLLFSLAVLYVVSKRIGLLTL 240
           LKKAESEYKGHRSLL RTRNLLSTMQRQD+IDRVI+G+GFLLFSLAVLYVVSKRIG+LTL
Sbjct: 181 LKKAESEYKGHRSLLTRTRNLLSTMQRQDIIDRVILGVGFLLFSLAVLYVVSKRIGILTL 240

Query: 241 QRKVTEAIKAGVVGQADLRPQAVADDMNLHQVRDDHVHNTEAPLEQRIHDEL 292
           QRKVT AIKAG++GQA LRPQAVA++MN HQ R D VHN EAPLEQ+IHDEL
Sbjct: 241 QRKVTGAIKAGMMGQAGLRPQAVAENMNPHQARVDRVHNIEAPLEQQIHDEL 292


>Medtr2g028660.2 | vesicle transporter Sec20, putative | HC |
           chr2:10627176-10632595 | 20130731
          Length = 310

 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/310 (70%), Positives = 239/310 (77%), Gaps = 18/310 (5%)

Query: 1   MDXXXXXXXXXXREWDEACGKTQLHIKAIADYGKSGRPKDEINSLARLNGMAQDGXXXXX 60
           MD          +EW+E C KTQ HI AI +YGKSGR KDE NSLARLNG+AQDG     
Sbjct: 1   MDKVVEEVERVKKEWNETCIKTQDHINAIGEYGKSGRSKDEKNSLARLNGIAQDGLALLS 60

Query: 61  XXXXXXXXXXPQLPTEKEVESARVLLESWKTLSQHLRLSLRNANLQAKANLRKAAQXXXX 120
                     PQLPT++EV+SAR LL+SWKTL+Q+LR+SLRNANLQAKANLRKAAQ    
Sbjct: 61  SLHFNLDLLAPQLPTQQEVDSARQLLQSWKTLTQNLRISLRNANLQAKANLRKAAQEECY 120

Query: 121 XXXXXXX------------------XSTIRRRNLQTKAGMTSAAESITDSLRRTRQLMVQ 162
                                     ST+RRRNLQTKAGMTSAAESIT+SLRRTRQLMVQ
Sbjct: 121 WEHLLVTDSEPISYIVRELLLGGGEESTVRRRNLQTKAGMTSAAESITESLRRTRQLMVQ 180

Query: 163 EVERNTSTLMTLDESTGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVIIGLGFLL 222
           EVERNTSTLMTLDESTGVLKKAESEYKGHRSLL RTRNLLSTMQRQD+IDRVI+G+GFLL
Sbjct: 181 EVERNTSTLMTLDESTGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDIIDRVILGVGFLL 240

Query: 223 FSLAVLYVVSKRIGLLTLQRKVTEAIKAGVVGQADLRPQAVADDMNLHQVRDDHVHNTEA 282
           FSLAVLYVVSKRIG+LTLQRKVT AIKAG++GQA LRPQAVA++MN HQ R D VHN EA
Sbjct: 241 FSLAVLYVVSKRIGILTLQRKVTGAIKAGMMGQAGLRPQAVAENMNPHQARVDRVHNIEA 300

Query: 283 PLEQRIHDEL 292
           PLEQ+IHDEL
Sbjct: 301 PLEQQIHDEL 310