Miyakogusa Predicted Gene

Lj3g3v1204550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1204550.1 Non Characterized Hit- tr|D8TQG4|D8TQG4_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,25.48,0.0003,seg,NULL,CUFF.42351.1
         (335 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g052500.1 | transmembrane protein, putative | HC | chr4:19...   334   7e-92

>Medtr4g052500.1 | transmembrane protein, putative | HC |
           chr4:19024439-19031358 | 20130731
          Length = 539

 Score =  334 bits (857), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 182/307 (59%), Positives = 217/307 (70%), Gaps = 13/307 (4%)

Query: 16  ITFFSASHNLNLPKNHAISPFPCSFSTKTSTPLASVLRAG----PPSPAVSDAEEEVLQM 71
           I F S  +     K  + SPFP +FST   TP  S LRA       +  VSD +E+VLQ 
Sbjct: 4   IRFVSNCYTFQFSKTPSFSPFPTAFST--YTPFVSSLRASRTTTATTTTVSDVDEDVLQT 61

Query: 72  FFKERELNGDFISKASDILWLRKFRSSVDSDISNLTNNNAASQQIELEQSIESNSDNGSA 131
           F K+RELNGDF+S+  D+LW    R S D D+S L ++N A Q   +EQ IE+NSD    
Sbjct: 62  FLKDRELNGDFVSRTCDLLWRMDIRDSGDYDVSELNDDNNAQQ---IEQIIETNSD---- 114

Query: 132 SGFLKLSTTQEWVLGDESAPRNKRMTAKMLQDSSERRKKLNILQYESLKRELLLVSVAVG 191
            GFLKLS+TQEW+LGD SAP N++MTAK + D+  R KKLN L+Y+SLK+ELLL+SV +G
Sbjct: 115 GGFLKLSSTQEWLLGDNSAPVNRKMTAKTILDNRARLKKLNALKYQSLKKELLLLSVGIG 174

Query: 192 LACSGYCLLVFSVQAAISYAIGVXXXXXXXXXXXQHADNLSSESVPQIFRXXXXXXIGIR 251
           L CSGYCL+VFSVQAAISYAIGV           Q ADN+SSE+VPQIF       IGIR
Sbjct: 175 LGCSGYCLVVFSVQAAISYAIGVLFSCLYLQLLYQQADNISSETVPQIFMKKKSKKIGIR 234

Query: 252 SEDLQDSLERSIKGCSMALSSPRLVIPATIYGLWALSHRYFTNDFFDFQLVPAMFGMFVY 311
           SEDL DS E++I+G  +ALSSPRLVIPA IYGLWA+SH+YF ND  DFQLVPAMFGMFVY
Sbjct: 235 SEDLSDSFEKTIRGSGIALSSPRLVIPAAIYGLWAVSHQYFINDLLDFQLVPAMFGMFVY 294

Query: 312 KAAALVQ 318
           KAAALVQ
Sbjct: 295 KAAALVQ 301