Miyakogusa Predicted Gene

Lj3g3v1145920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1145920.1 Non Characterized Hit- tr|A9NPB9|A9NPB9_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,59.65,2e-19,Ribosomal_60s,Ribosomal protein 60S; seg,NULL; 60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL,CUFF.42299.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g085085.2 | 60S acidic ribosomal protein | HC | chr2:36125...    99   9e-22
Medtr2g085085.1 | 60S acidic ribosomal protein | HC | chr2:36125...    99   9e-22
Medtr0227s0020.1 | 60S acidic ribosomal protein | HC | scaffold0...    96   7e-21
Medtr1g060600.1 | 60S acidic ribosomal protein | HC | chr1:26385...    89   7e-19
Medtr2g085105.1 | ribosomal protein | LC | chr2:36132354-3613060...    50   4e-07

>Medtr2g085085.2 | 60S acidic ribosomal protein | HC |
          chr2:36125832-36124476 | 20130731
          Length = 113

 Score = 99.0 bits (245), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 57/62 (91%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MK+IAAYLLAVLGGN SPSA DLK ILGSVGV+AE+  I+LLL+EVKGKDFAE+IASGRE
Sbjct: 1  MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>Medtr2g085085.1 | 60S acidic ribosomal protein | HC |
          chr2:36125832-36124476 | 20130731
          Length = 113

 Score = 99.0 bits (245), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 57/62 (91%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MK+IAAYLLAVLGGN SPSA DLK ILGSVGV+AE+  I+LLL+EVKGKDFAE+IASGRE
Sbjct: 1  MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>Medtr0227s0020.1 | 60S acidic ribosomal protein | HC |
          scaffold0227:7789-5926 | 20130731
          Length = 113

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 57/62 (91%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MK+IAAY+LAVLGGNS+PSA D+K IL SVGV+AE+  I+LLL+EVKGKDFAE+IASGRE
Sbjct: 1  MKIIAAYMLAVLGGNSAPSADDIKTILSSVGVEAEDSNIELLLSEVKGKDFAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>Medtr1g060600.1 | 60S acidic ribosomal protein | HC |
          chr1:26385779-26387969 | 20130731
          Length = 112

 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 55/62 (88%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV+AAYLLAVLGG+++PSA  +K+ILGSVG DAE++ I+  L+E+KGKD AE+IASGRE
Sbjct: 1  MKVVAAYLLAVLGGDNTPSAKTIKDILGSVGADAEDNRIESFLSEIKGKDIAEVIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>Medtr2g085105.1 | ribosomal protein | LC | chr2:36132354-36130601
          | 20130731
          Length = 51

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/29 (82%), Positives = 25/29 (86%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGS 29
          MK+I AYLLAVLGGN SPSA DLK ILGS
Sbjct: 1  MKIIVAYLLAVLGGNQSPSAADLKQILGS 29