Miyakogusa Predicted Gene

Lj3g3v1133720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1133720.1 Non Characterized Hit- tr|I1IUD8|I1IUD8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,49.51,2e-19,Dabb,Stress responsive alpha-beta barrel; Dimeric
alpha+beta barrel,Dimeric alpha-beta barrel; Stres,CUFF.42278.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g084985.1 | stress responsive A/B barrel domain protein | ...   182   6e-47
Medtr4g124920.1 | stress responsive A/B barrel domain protein | ...    81   2e-16
Medtr4g124920.2 | stress responsive A/B barrel domain protein | ...    52   2e-07

>Medtr2g084985.1 | stress responsive A/B barrel domain protein | HC
           | chr2:36062434-36061127 | 20130731
          Length = 111

 Score =  182 bits (462), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/107 (85%), Positives = 96/107 (89%)

Query: 1   MGEFKHFVIVKFKEDVVVEELTKAMEKLVSEIDAVKSFEWGQDIESLDILRQGFTHAFLM 60
           M EFKHFVIVKFKE VVVEELTK MEKLVSEID VKSFEWGQDIESLD+LRQGFTHAFLM
Sbjct: 4   MEEFKHFVIVKFKEGVVVEELTKGMEKLVSEIDLVKSFEWGQDIESLDVLRQGFTHAFLM 63

Query: 61  TFSKKEDFAAFQGHPNHVEFSATFSSAIEKIVVLDFPSTLVKPPAAA 107
           TF+KKEDFAAFQ HP+HVEFS  FS+AIEKIV+LDFPS LVKP   A
Sbjct: 64  TFNKKEDFAAFQSHPSHVEFSEKFSTAIEKIVLLDFPSNLVKPVKEA 110


>Medtr4g124920.1 | stress responsive A/B barrel domain protein | HC
           | chr4:51809567-51808235 | 20130731
          Length = 104

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 5   KHFVIVKFKEDVV---VEELTKAMEKLVSEIDAVKSFEWGQDIESLDILRQGFTHAFLMT 61
           KH VI KFK+++    ++EL K    LV+ I  +KSF WG D+ S + L QGFTH F   
Sbjct: 4   KHIVIAKFKDEISQEKIDELIKGYANLVNLIPPMKSFHWGTDV-SAENLHQGFTHVFESN 62

Query: 62  FSKKEDFAAFQGHPNHVEFSATFSSAIEKIVVLDFPSTLVK 102
           F   E  A +  HP HVE++  F S +EK++ +D+  T+V 
Sbjct: 63  FESVEAIAEYVAHPAHVEYANLFLSNLEKVIAIDYKPTIVN 103


>Medtr4g124920.2 | stress responsive A/B barrel domain protein |
          HC | chr4:51809545-51807306 | 20130731
          Length = 87

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 5  KHFVIVKFKEDVV---VEELTKAMEKLVSEIDAVKSFEWGQDIESLDILRQGFTHAFLMT 61
          KH VI KFK+++    ++EL K    LV+ I  +KSF WG D+ S + L QGFTH F   
Sbjct: 4  KHIVIAKFKDEISQEKIDELIKGYANLVNLIPPMKSFHWGTDV-SAENLHQGFTHVFESN 62

Query: 62 FSKKEDFA 69
          F   E  A
Sbjct: 63 FESVEAIA 70