Miyakogusa Predicted Gene

Lj3g3v1113600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1113600.1 tr|G7JTQ9|G7JTQ9_MEDTR Histone H2B OS=Medicago
truncatula GN=MTR_4g063240 PE=3 SV=1,87.07,0,seg,NULL;
HISTONE_H2B,Histone H2B; HISTONE H2B,Histone H2B; HISTONEH2B,Histone
H2B; Histone-fold,His,CUFF.42264.1
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g064020.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2388556...   191   2e-49
Medtr4g063990.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2386842...   191   2e-49
Medtr4g063220.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2340909...   191   2e-49
Medtr4g063200.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2340181...   191   2e-49
Medtr4g063240.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2341624...   191   2e-49
Medtr4g071180.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2683248...   189   8e-49
Medtr4g070240.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2643379...   189   8e-49
Medtr1g090780.1 | core histone H2A/H2B/H3/H4 | HC | chr1:4079553...   189   1e-48
Medtr1g492910.1 | core histone H2A/H2B/H3/H4 | HC | chr1:4167019...   189   1e-48
Medtr4g088025.1 | core histone H2A/H2B/H3/H4 | HC | chr4:3466251...   189   1e-48
Medtr7g099960.1 | core histone H2A/H2B/H3/H4 | HC | chr7:4018079...   186   6e-48
Medtr1g068600.1 | histone H2A 6 | HC | chr1:29390805-29391990 | ...   185   1e-47
Medtr4g070245.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2643528...   183   4e-47
Medtr4g063275.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2345390...   183   4e-47
Medtr4g064983.1 | core histone H2A/H2B/H3/H4 | LC | chr4:2430705...   182   1e-46
Medtr2g084480.1 | core histone H2A/H2B/H3/H4 | HC | chr2:3564849...   124   4e-29
Medtr4g063270.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2345192...    94   3e-20
Medtr8g069990.1 | core histone H2A/H2B/H3/H4 | HC | chr8:2968458...    91   4e-19
Medtr7g114580.1 | histone H2B-like protein | HC | chr7:47317349-...    77   5e-15
Medtr4g032777.1 | histone H2B, putative | LC | chr4:11322008-113...    62   2e-10
Medtr4g132367.1 | histone H2B.1-like protein | HC | chr4:5532527...    59   1e-09

>Medtr4g064020.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:23885563-23886484 | 20130731
          Length = 148

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 57  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 117 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148


>Medtr4g063990.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:23868422-23869268 | 20130731
          Length = 148

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 57  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 117 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148


>Medtr4g063220.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:23409093-23408205 | 20130731
          Length = 148

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 57  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 117 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148


>Medtr4g063200.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:23401818-23402612 | 20130731
          Length = 148

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 57  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 117 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148


>Medtr4g063240.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:23416247-23415420 | 20130731
          Length = 147

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 56  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 115

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 116 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147


>Medtr4g071180.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:26832481-26833267 | 20130731
          Length = 148

 Score =  189 bits (480), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 57  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 117 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148


>Medtr4g070240.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:26433791-26434556 | 20130731
          Length = 148

 Score =  189 bits (480), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 57  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 117 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148


>Medtr1g090780.1 | core histone H2A/H2B/H3/H4 | HC |
           chr1:40795532-40796244 | 20130731
          Length = 137

 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 46  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 105

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 106 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137


>Medtr1g492910.1 | core histone H2A/H2B/H3/H4 | HC |
           chr1:41670194-41670930 | 20130731
          Length = 137

 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 46  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 105

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 106 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137


>Medtr4g088025.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:34662513-34661454 | 20130731
          Length = 143

 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 52  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143


>Medtr7g099960.1 | core histone H2A/H2B/H3/H4 | HC |
           chr7:40180795-40179771 | 20130731
          Length = 138

 Score =  186 bits (472), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 47  SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 106

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 107 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138


>Medtr1g068600.1 | histone H2A 6 | HC | chr1:29390805-29391990 |
           20130731
          Length = 136

 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 92/92 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSR
Sbjct: 45  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 104

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 105 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136


>Medtr4g070245.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:26435287-26436119 | 20130731
          Length = 148

 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/91 (97%), Positives = 89/91 (97%)

Query: 53  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 112
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESSRLARYNKKPTITSRE
Sbjct: 58  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSRE 117

Query: 113 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           IQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 118 IQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148


>Medtr4g063275.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:23453901-23453073 | 20130731
          Length = 148

 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 89/92 (96%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVL  VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 57  NVETYKIYIFKVLNHVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           EIQTAV LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 117 EIQTAVSLVLPGELAKHAVSEGTKAVTKFTSS 148


>Medtr4g064983.1 | core histone H2A/H2B/H3/H4 | LC |
           chr4:24307050-24308801 | 20130731
          Length = 241

 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
           NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 57  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 116

Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTK 139
           EIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct: 117 EIQTAVRLVLPGELAKHAVSEGTKAVTK 144


>Medtr2g084480.1 | core histone H2A/H2B/H3/H4 | HC |
           chr2:35648498-35647815 | 20130731
          Length = 227

 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 73/89 (82%)

Query: 54  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 113
           E Y+ Y+++VLKQVHP +GISS+AM I+N+ +ND+FEKLA E+++L  Y K  T+TSREI
Sbjct: 136 EGYQRYVYRVLKQVHPQMGISSQAMTILNNLMNDMFEKLADEAAKLTAYTKHMTLTSREI 195

Query: 114 QTAVRLVLPGELAKHAVSEGTKAVTKFTS 142
           Q AV+LVLPGEL KHA++EG KAVT + S
Sbjct: 196 QGAVKLVLPGELGKHAIAEGAKAVTNYVS 224


>Medtr4g063270.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:23451928-23451773 | 20130731
          Length = 51

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 46/51 (90%)

Query: 81  MNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVS 131
           MN FINDIFEKLAQE SRLARYNKKPTITSREIQTAVRLVLPGELAK   S
Sbjct: 1   MNHFINDIFEKLAQEYSRLARYNKKPTITSREIQTAVRLVLPGELAKFTSS 51


>Medtr8g069990.1 | core histone H2A/H2B/H3/H4 | HC |
           chr8:29684584-29684874 | 20130731
          Length = 96

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 47/51 (92%)

Query: 52  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARY 102
           ++ETYKIYIFKVLKQVHP IG+SSKAMG++NSF+NDIF+KLAQE  RL RY
Sbjct: 38  SIETYKIYIFKVLKQVHPAIGVSSKAMGVINSFVNDIFKKLAQELLRLVRY 88


>Medtr7g114580.1 | histone H2B-like protein | HC |
           chr7:47317349-47317555 | 20130731
          Length = 51

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/41 (90%), Positives = 39/41 (95%)

Query: 103 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           +KKPTITSREIQT VRL+LPGELAKH VSEGTKAVTKFTSS
Sbjct: 11  HKKPTITSREIQTVVRLILPGELAKHVVSEGTKAVTKFTSS 51


>Medtr4g032777.1 | histone H2B, putative | LC |
           chr4:11322008-11321604 | 20130731
          Length = 134

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query: 59  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 118
           YI+KVL+Q HPDI I   AM +MN  I+++  KL  ESS +    K   +T++E+  AV+
Sbjct: 42  YIYKVLEQEHPDIAIFVGAMDMMNIMISNVMMKLIHESSNVTSSKKLTMMTAKEMNAAVK 101

Query: 119 LVLPGELAK 127
            V P E+AK
Sbjct: 102 GVFPEEMAK 110


>Medtr4g132367.1 | histone H2B.1-like protein | HC |
           chr4:55325277-55323095 | 20130731
          Length = 287

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 59  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARY-NKKPTITSREIQTAV 117
           +I++VLK+VHPDI IS+ A+ +MN+ + D+  KLAQ++S+  +  +K   +   +I  AV
Sbjct: 34  FIYEVLKKVHPDIAISAGAVELMNTILTDMMLKLAQKASKHNKIRHKNSPLVEPDISAAV 93

Query: 118 RLVLPGELAKHAVSEGTKAVTK 139
           R V P ++A  A+    K+V +
Sbjct: 94  REVFPEDMAGLALLSALKSVIR 115