Miyakogusa Predicted Gene

Lj3g3v1113120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1113120.1 tr|B9HQM8|B9HQM8_POPTR Predicted protein
OS=Populus trichocarpa GN=MYB025 PE=4
SV=1,42.47,2e-18,seg,NULL,NODE_17314_length_1059_cov_31.740320.path1.1
         (202 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g095520.1 | myb transcription factor | HC | chr2:40820355-...    67   1e-11
Medtr4g057635.1 | myb transcription factor | HC | chr4:21173419-...    56   2e-08

>Medtr2g095520.1 | myb transcription factor | HC |
           chr2:40820355-40818577 | 20130731
          Length = 320

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 95/204 (46%), Gaps = 43/204 (21%)

Query: 16  PLIIPSHYRDFCSSY--PAANNTSFTGLEPISVSPSNYFTSTNCISTTSMSLPFYNQNQE 73
           P +  S +   C+SY      NTSFT       S    F+     S++S+SLPFY  NQE
Sbjct: 130 PYLTSSSFPSHCTSYFNQTPTNTSFT------TSLEQQFSVP--SSSSSISLPFY-HNQE 180

Query: 74  PSLVSASASP-----MQYQYHP--MTENLFMFXXXXXXXXXXXXXXXXXXXXIKQEEIMG 126
             L   S++      MQYQ     M E+L MF                     KQEEIMG
Sbjct: 181 SLLNGFSSNTNTNISMQYQLQNPMMKESLVMFGSEGSCCSSSDGSLG------KQEEIMG 234

Query: 127 FDQNLMMYNKSILS------DVN-QCGQESPNGCLFQTQSQ-------LDYDLEVIKQLV 172
           F QN M  NK  LS      DVN Q  +E  N C  Q   +       LDYDLE IKQL+
Sbjct: 235 F-QNFMQINKFNLSHGSDVVDVNNQWEREKVNLCFSQNHEKQITSTTPLDYDLEYIKQLI 293

Query: 173 SSS----NNGCFNVDENKTEEKAM 192
           SS+    NNG  ++DENK EEK M
Sbjct: 294 SSNSGSCNNGYLSIDENKMEEKTM 317


>Medtr4g057635.1 | myb transcription factor | HC |
           chr4:21173419-21175385 | 20130731
          Length = 324

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 83/182 (45%), Gaps = 38/182 (20%)

Query: 36  TSFTGLEPISVSPSNYFTSTNCISTTSMSLPFYNQNQEPSLVSASASPMQYQYHPMTENL 95
           TS   L+ IS+  +NY         TS + PFY QNQE S++S    PMQY Y P+ +N+
Sbjct: 151 TSLIDLQTISLPSNNY-------PNTSFN-PFY-QNQE-SMISVVNPPMQYNY-PIKDNM 199

Query: 96  FMFXXXXXXXXXXXXXXXXXXXXIKQEEIM--------GFD--------QNLMMYNKSIL 139
           FMF                    IKQEEI+        GFD                 + 
Sbjct: 200 FMFGSEGSSSSDGSCTLSHGKE-IKQEEIVYHHNMNSGGFDGYNNNNNFMINGNIGSFVG 258

Query: 140 SDVNQCGQESPNGCLF---QTQSQ-----LDYDLEVIKQLVSSSNNGCFNVDE-NKTEEK 190
             VNQ  +E  +G  +     QSQ     LDY LE IKQL+SSS N  F+VD+ +K EE 
Sbjct: 259 ESVNQH-EEKSSGVGYSYNNGQSQTLNPLLDYGLEDIKQLISSSGNKGFHVDDIHKNEEI 317

Query: 191 AM 192
            M
Sbjct: 318 GM 319