Miyakogusa Predicted Gene

Lj3g3v1089450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1089450.1 Non Characterized Hit- tr|F6GU18|F6GU18_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.44,6e-16,seg,NULL,CUFF.42170.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g058700.1 | zinc finger, C3HC4 type (RING finger) protein ...    65   2e-11

>Medtr4g058700.1 | zinc finger, C3HC4 type (RING finger) protein |
          HC | chr4:21590095-21595659 | 20130731
          Length = 704

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 1  MESRWRK----LWINMCVHVPKTVNHXXXXXXXXXXXXGHVLTSGDGSGYRATTPTXXXX 56
          M S+WRK    L +N CVH+P+ ++                  +GD SGY  +  +    
Sbjct: 1  MGSKWRKVKLALGLNSCVHIPQPLDDSSAARFSGATSSAASSLAGDTSGYSPSIQSPSSS 60

Query: 57 XXXXXXXXXXXXXXXQGTCAICLNSLKAGKGHAIFTAECSHS 98
                         +GTCAICLN++K G GHAIFTAECSHS
Sbjct: 61 GFRLLKSP-------KGTCAICLNTMKPGNGHAIFTAECSHS 95