Miyakogusa Predicted Gene
- Lj3g3v1089440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1089440.1 Non Characterized Hit- tr|Q9M1S2|Q9M1S2_ARATH
Putative uncharacterized protein T5N23_140
OS=Arabidop,81.36,2e-19,ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY
PROTEIN,NULL; CALCIUM-ACTIVATED CHLORIDE CHANNEL
REGULAT,AV407180.path1.1
(62 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g058700.1 | zinc finger, C3HC4 type (RING finger) protein ... 104 1e-23
Medtr1g094830.1 | zinc finger, C3HC4 type (RING finger) protein ... 103 3e-23
Medtr1g094830.2 | zinc finger, C3HC4 type (RING finger) protein ... 103 3e-23
Medtr2g094930.1 | zinc finger, C3HC4 type (RING finger) protein ... 97 2e-21
Medtr3g111210.1 | zinc finger (C3HC4-type RING finger) family pr... 60 4e-10
Medtr2g027780.1 | zinc finger, C3HC4 type (RING finger) protein ... 59 8e-10
Medtr5g030690.1 | zinc finger, C3HC4 type (RING finger) protein ... 55 1e-08
Medtr5g430750.1 | zinc finger, C3HC4 type (RING finger) protein ... 55 1e-08
Medtr8g067490.1 | zinc finger (C3HC4-type RING finger) family pr... 54 2e-08
>Medtr4g058700.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:21590095-21595659 | 20130731
Length = 704
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
M GTK+ALLKRAMGFVIQN+ SDRLSV+AFSSTARRIFPLR+MTE GRQ+ALQAVNSL
Sbjct: 269 MLGTKLALLKRAMGFVIQNMGPSDRLSVIAFSSTARRIFPLRKMTEIGRQEALQAVNSL 327
>Medtr1g094830.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:42650747-42655415 | 20130731
Length = 728
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 57/59 (96%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
MAGTK+ALLKRAMGFVIQNL ++DRLSV+AFSSTARR+FPL +MT++GRQQALQAVNSL
Sbjct: 292 MAGTKLALLKRAMGFVIQNLGTNDRLSVIAFSSTARRLFPLCKMTDSGRQQALQAVNSL 350
>Medtr1g094830.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:42652537-42655415 | 20130731
Length = 642
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 57/59 (96%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
MAGTK+ALLKRAMGFVIQNL ++DRLSV+AFSSTARR+FPL +MT++GRQQALQAVNSL
Sbjct: 206 MAGTKLALLKRAMGFVIQNLGTNDRLSVIAFSSTARRLFPLCKMTDSGRQQALQAVNSL 264
>Medtr2g094930.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:40529714-40527813 | 20130731
Length = 633
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 55/62 (88%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSLD 60
M G+KI LLK+AM FVIQNLSSSDRLS++ FSSTARRIFPLR+M + GRQQAL+AVN+L
Sbjct: 197 MTGSKITLLKQAMSFVIQNLSSSDRLSIIVFSSTARRIFPLRRMNDDGRQQALRAVNALV 256
Query: 61 PD 62
P+
Sbjct: 257 PN 258
>Medtr3g111210.1 | zinc finger (C3HC4-type RING finger) family
protein | HC | chr3:51968411-51966024 | 20130731
Length = 766
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
M+ K+ +LKRAM VI +L SDRLS+VAFSS ++R+ PLR+MT G++ A + V+ L
Sbjct: 363 MSSAKLHMLKRAMRLVISSLGPSDRLSIVAFSSISKRLLPLRRMTAQGQRLARRIVDRL 421
>Medtr2g027780.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:10188015-10192101 | 20130731
Length = 554
Score = 59.3 bits (142), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 3 GTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
G + LLK+AM V+ +L DRL++V +SS A R+FPLR+MT G++ ALQ ++ L
Sbjct: 287 GPHLRLLKQAMALVVFSLRHIDRLAIVTYSSAAARVFPLRRMTTYGKRTALQVIDRL 343
>Medtr5g030690.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr5:13031775-13029571 | 20130731
Length = 691
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
M+G K+ L+K M VI +L+++DRLS+VAFS ++R+ PL++MT G++ A + V +L
Sbjct: 305 MSGQKLRLMKNTMRLVISSLNATDRLSIVAFSGGSKRLLPLKRMTGGGQRSARRIVEAL 363
>Medtr5g430750.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr5:13102199-13099559 | 20130731
Length = 691
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMTETGRQQALQAVNSL 59
M+G K+ L+K M VI +L+++DRLS+VAFS ++R+ PL++MT G++ A + V +L
Sbjct: 305 MSGQKLRLMKNTMRLVISSLNATDRLSIVAFSGGSKRLLPLKRMTGGGQRSARRIVEAL 363
>Medtr8g067490.1 | zinc finger (C3HC4-type RING finger) family
protein, putative | HC | chr8:28183554-28181011 |
20130731
Length = 611
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 1 MAGTKIALLKRAMGFVIQNLSSSDRLSVVAFSSTARRIFPLRQMT 45
++G I LKR+M VI L+SSDRLSVV FSS ++R+FPLR+MT
Sbjct: 277 ISGEDILKLKRSMQVVISALNSSDRLSVVVFSSGSKRLFPLRRMT 321