Miyakogusa Predicted Gene

Lj3g3v1011110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1011110.1 Non Characterized Hit- tr|I1MK11|I1MK11_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.30176
PE,81.4,0.00000000002, ,CUFF.41998.1
         (49 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g020880.2 | RelA/SpoT-like protein RSH2 | HC | chr8:737042...    54   5e-08
Medtr8g020880.1 | RelA/SpoT-like protein RSH2 | HC | chr8:737042...    53   5e-08

>Medtr8g020880.2 | RelA/SpoT-like protein RSH2 | HC |
          chr8:7370427-7366669 | 20130731
          Length = 682

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 28/34 (82%), Gaps = 4/34 (11%)

Query: 1  MAVSTVALYASPPSSVCSTPHPCPPHTSYDFELG 34
          MAVST+ALYASPPSSVCSTPH      +YDFELG
Sbjct: 1  MAVSTIALYASPPSSVCSTPH----QINYDFELG 30


>Medtr8g020880.1 | RelA/SpoT-like protein RSH2 | HC |
          chr8:7370427-7366192 | 20130731
          Length = 726

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 28/34 (82%), Gaps = 4/34 (11%)

Query: 1  MAVSTVALYASPPSSVCSTPHPCPPHTSYDFELG 34
          MAVST+ALYASPPSSVCSTPH      +YDFELG
Sbjct: 1  MAVSTIALYASPPSSVCSTPH----QINYDFELG 30