Miyakogusa Predicted Gene

Lj3g3v0966470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0966470.1 tr|C0Z2Y2|C0Z2Y2_ARATH AT1G79040 protein
OS=Arabidopsis thaliana GN=AT1G79040 PE=4 SV=1,67.61,5e-19,seg,NULL;
PsbR,Photosystem II PsbR,CUFF.42327.1
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g064650.1 | photosystem II 10 kDa proteinPsbR protein | HC...   182   1e-46
Medtr2g064650.2 | photosystem II 10 kDa proteinPsbR protein | HC...   150   3e-37

>Medtr2g064650.1 | photosystem II 10 kDa proteinPsbR protein | HC |
           chr2:29315495-29313043 | 20130731
          Length = 136

 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 104/139 (74%), Gaps = 3/139 (2%)

Query: 1   MASSVMASVSLKPAGFSLEKSSVRGLPXXXXXXXXXXXXXXGGKKIKTDTPYGTGGGMNL 60
           MASSVMASVSLKP  F +EKSSVRGLP              G KKIKTDTPYGTGGGM L
Sbjct: 1   MASSVMASVSLKPTPFRVEKSSVRGLPALSRPFKVVAS---GVKKIKTDTPYGTGGGMAL 57

Query: 61  RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTX 120
            +G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVT 
Sbjct: 58  PDGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTL 117

Query: 121 XXXXXXXXXXVYNTSALSQ 139
                     VYNTSALSQ
Sbjct: 118 AGLLAGGALLVYNTSALSQ 136


>Medtr2g064650.2 | photosystem II 10 kDa proteinPsbR protein | HC |
           chr2:29315474-29312795 | 20130731
          Length = 127

 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 87/115 (75%), Gaps = 3/115 (2%)

Query: 1   MASSVMASVSLKPAGFSLEKSSVRGLPXXXXXXXXXXXXXXGGKKIKTDTPYGTGGGMNL 60
           MASSVMASVSLKP  F +EKSSVRGLP              G KKIKTDTPYGTGGGM L
Sbjct: 1   MASSVMASVSLKPTPFRVEKSSVRGLPALSRPFKVVAS---GVKKIKTDTPYGTGGGMAL 57

Query: 61  RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAI 115
            +G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GG   L +
Sbjct: 58  PDGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGKKLLFL 112