Miyakogusa Predicted Gene

Lj3g3v0965910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0965910.1 tr|A9T314|A9T314_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_87421
,42.11,1e-18,RRM_1,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; no descripti,CUFF.41913.1
         (425 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   179   3e-45
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    58   2e-08
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    55   1e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-...    55   1e-07
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch...    52   1e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    52   1e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   2e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   2e-06
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    51   2e-06
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    51   2e-06
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    51   2e-06
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    51   2e-06
Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC...    50   6e-06
Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC...    49   6e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   6e-06

>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr2:28910323-28904195 | 20130731
          Length = 415

 Score =  179 bits (455), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 93/116 (80%), Gaps = 2/116 (1%)

Query: 103 RESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEK 162
           RESLVLHVEKLSRNVNEGHLKEIFSN+GEVVSVEL MDR VNLPKGY YV FK RG+AEK
Sbjct: 97  RESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEK 156

Query: 163 ALLYMDGAQIDGNVIKARFTLXXXXXXXXXXXXXXXXXXREAPRTDNAGADIEKDG 218
           ALLYMDGAQIDGNV+KARFTL                  R+APRTDNAGA++EKDG
Sbjct: 157 ALLYMDGAQIDGNVVKARFTL--PPRQKASPPPKAVAPKRDAPRTDNAGAEVEKDG 210


>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr6:28646362-28643393 | 20130731
          Length = 183

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L+V  LS    E  L+  F N+G++V V L MD++ N P+G+A++++    +++KA+  M
Sbjct: 97  LYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEGM 156

Query: 168 DGAQIDGNVI 177
            G  +DG VI
Sbjct: 157 HGKFLDGRVI 166


>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:42674424-42676547 | 20130731
          Length = 140

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L V  LS +  E  L + FSNYG+VV  ++  DRI    KGY +V F ++ +AEKA+  M
Sbjct: 34  LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93

Query: 168 DGAQIDGNVI 177
           +   ++G V+
Sbjct: 94  NEKALNGRVV 103


>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
           chr7:43324307-43322087 | 20130731
          Length = 318

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L+V  L  ++    L +IF+  G VVSVE+  DR+ +  +G+A+V  K+  +A++A+   
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170

Query: 168 DGAQIDGNVIKARF 181
           DG+Q+ G   K  F
Sbjct: 171 DGSQVGGRSAKVNF 184


>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
           chr2:41853094-41847353 | 20130731
          Length = 428

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%)

Query: 104 ESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKA 163
           E   L +  L   V+E +L   FS+ GEV+S+++  ++I   P+GY +++F +   AE+ 
Sbjct: 13  EVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERV 72

Query: 164 LLYMDGAQIDGN 175
           L   +G Q+ G 
Sbjct: 73  LQTYNGTQMPGT 84


>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:31628430-31625444 | 20130731
          Length = 144

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 105 SLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKAL 164
           S  L V  LS+      L+E F  +GEVV   +  DR+    KG+ +V++    DA K +
Sbjct: 50  STNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGI 109

Query: 165 LYMDGAQIDGNVIKARF 181
             MDG  ++G VI A +
Sbjct: 110 EGMDGKFLEGWVIFAEY 126


>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700218-24705084 | 20130731
          Length = 311

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query: 102 TRESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAE 161
           + +S  L V  L  +++   L ++F   G VVSVE+  D I N  +G+A+V      DAE
Sbjct: 104 STQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAE 163

Query: 162 KALLYMDGAQIDGNVIKARF 181
           +A+   DG  + G  IK  F
Sbjct: 164 EAIRMFDGTTVGGRAIKVNF 183


>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700221-24703822 | 20130731
          Length = 311

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query: 102 TRESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAE 161
           + +S  L V  L  +++   L ++F   G VVSVE+  D I N  +G+A+V      DAE
Sbjct: 104 STQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAE 163

Query: 162 KALLYMDGAQIDGNVIKARF 181
           +A+   DG  + G  IK  F
Sbjct: 164 EAIRMFDGTTVGGRAIKVNF 183


>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:3986546-3983001 | 20130731
          Length = 253

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%)

Query: 105 SLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKAL 164
           S  L +  +S + +E  L+E FS YG+V+  ++ MDR     +G+ ++ F    +A  AL
Sbjct: 39  SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98

Query: 165 LYMDGAQIDGNVIKARF 181
             MD  ++DG  ++  +
Sbjct: 99  QAMDNKELDGRTVRVNY 115


>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:3986488-3983001 | 20130731
          Length = 253

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%)

Query: 105 SLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKAL 164
           S  L +  +S + +E  L+E FS YG+V+  ++ MDR     +G+ ++ F    +A  AL
Sbjct: 39  SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98

Query: 165 LYMDGAQIDGNVIKARF 181
             MD  ++DG  ++  +
Sbjct: 99  QAMDNKELDGRTVRVNY 115


>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr6:28646362-28643393 | 20130731
          Length = 169

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query: 108 LHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLYM 167
           L+V  LS    E  L+  F N+G++V V L MD++ N P+G+A++++    +++KA+  M
Sbjct: 97  LYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEGM 156

Query: 168 DG 169
            G
Sbjct: 157 HG 158


>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           LC | chr4:31623161-31620622 | 20130731
          Length = 185

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%)

Query: 107 VLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALLY 166
           ++ V  L++      L+E F  +GEV  V +  DR+    KG+ YV++    DA K +  
Sbjct: 45  IVFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQG 104

Query: 167 MDGAQIDGNVIKARF 181
           MDG  ++G ++ A +
Sbjct: 105 MDGKFLEGWIVFAEY 119


>Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:46405206-46401029 | 20130731
          Length = 252

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 103 RESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEK 162
           R S  ++V  L  ++    ++++F  +G +V +EL   +I   P GYA+V+F+   DAE 
Sbjct: 4   RSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIEL---KIPPRPPGYAFVEFEDARDAED 60

Query: 163 ALLYMDGAQIDG 174
           A+ Y DG + DG
Sbjct: 61  AIRYRDGYKFDG 72


>Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:46405226-46398545 | 20130731
          Length = 292

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 103 RESLVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEK 162
           R S  ++V  L  ++    ++++F  +G +V +EL   +I   P GYA+V+F+   DAE 
Sbjct: 4   RSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIEL---KIPPRPPGYAFVEFEDARDAED 60

Query: 163 ALLYMDGAQIDG 174
           A+ Y DG + DG
Sbjct: 61  AIRYRDGYKFDG 72


>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:45527062-45523373 | 20130731
          Length = 276

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query: 106 LVLHVEKLSRNVNEGHLKEIFSNYGEVVSVELAMDRIVNLPKGYAYVQFKARGDAEKALL 165
           L L V  +S + +E  L+E FS YGEV+   + MDR     +G+ ++ F +  +A  A+ 
Sbjct: 50  LHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 109

Query: 166 YMDGAQIDGNVIKARF 181
            +DG  + G  ++  +
Sbjct: 110 ALDGQDLHGRRVRVNY 125