Miyakogusa Predicted Gene

Lj3g3v0965630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0965630.1 tr|B9SHS2|B9SHS2_RICCO DNA-directed RNA
polymerase OS=Ricinus communis GN=RCOM_0620590 PE=3
SV=1,90,0.0000000000003,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; RNA_pol_Rpb2_6,DNA-directed RNA p,CUFF.41883.1
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g023445.1 | DNA-directed RNA polymerase | LC | chr8:845866...   249   3e-67
Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC ...   155   1e-38
Medtr3g105990.1 | DNA-directed RNA polymerase subunit beta | HC ...   111   2e-25
Medtr1g022135.1 | DNA-directed RNA polymerase | HC | chr1:686549...   109   8e-25
Medtr4g124030.1 | DNA-directed RNA polymerase | HC | chr4:511718...   100   5e-22
Medtr0002s0510.1 | DNA-directed RNA polymerase subunit beta | LC...    58   3e-09
Medtr4g051130.1 | DNA-directed RNA polymerase subunit beta | HC ...    56   9e-09

>Medtr8g023445.1 | DNA-directed RNA polymerase | LC |
            chr8:8458667-8488921 | 20130731
          Length = 2002

 Score =  249 bits (637), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/133 (87%), Positives = 126/133 (94%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            MGPIYYQKLKHMVLDKMHARG+GP+  + RQPTEG+ARNGGLR+GEMERDCLIAYGASML
Sbjct: 1869 MGPIYYQKLKHMVLDKMHARGSGPKALITRQPTEGRARNGGLRVGEMERDCLIAYGASML 1928

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQEL 120
            IFERLMLSSDP+EVQVCR+CGLLGYYN+KLK GVC SCKNG QIS MKLPYACKLLIQEL
Sbjct: 1929 IFERLMLSSDPYEVQVCRACGLLGYYNHKLKAGVCSSCKNGKQISTMKLPYACKLLIQEL 1988

Query: 121  QSMNIVPRLKLEE 133
            QSMNIVPRLKLE+
Sbjct: 1989 QSMNIVPRLKLED 2001


>Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC |
            chr1:7523400-7533496 | 20130731
          Length = 1195

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/133 (54%), Positives = 90/133 (67%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            +GP YYQ+LKHMV DK+H+RG GP   L RQP EG++R+GGLR GEMERDC+IA+GA+  
Sbjct: 1051 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1110

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQEL 120
            + ERL   SD + V VC  CGL+   N K     C  CKN   I  + +PYACKLL QEL
Sbjct: 1111 LKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQEL 1170

Query: 121  QSMNIVPRLKLEE 133
             +M I PR+  +E
Sbjct: 1171 MAMAIAPRMLTKE 1183


>Medtr3g105990.1 | DNA-directed RNA polymerase subunit beta | HC |
            chr3:48883860-48876376 | 20130731
          Length = 1188

 Score =  111 bits (277), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/139 (41%), Positives = 78/139 (56%), Gaps = 7/139 (5%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            MGP +YQ+L HM  DK+  R  GP + L RQP   + R GG++ GEMERDCLIA+GAS  
Sbjct: 1048 MGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1107

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYY-------NYKLKIGVCPSCKNGDQISNMKLPYAC 113
            ++ERL   SD  ++ +C  C  +            K++   C  C++ D I    +PY  
Sbjct: 1108 LYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGA 1167

Query: 114  KLLIQELQSMNIVPRLKLE 132
            KLL QEL SM I  + + E
Sbjct: 1168 KLLSQELFSMGINLKFETE 1186


>Medtr1g022135.1 | DNA-directed RNA polymerase | HC |
           chr1:6865496-6872581 | 20130731
          Length = 299

 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 79/129 (61%), Gaps = 8/129 (6%)

Query: 13  VLDKMHARGNGPRNSLHRQPTEGKA----RNGGLRIGEMERDCL----IAYGASMLIFER 64
            L+ + ++  GPR S      +G+A    +N  L    M  D      I     M     
Sbjct: 168 ALEYLDSKAKGPRFSNMAAEKDGRAFNILKNEFLANVPMHGDNFRPKCIYLAVMMRRIMD 227

Query: 65  LMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQELQSMN 124
            +L+ D  + +VC +CGLLGYYN+KLK G C SCKNG QISN+K+PYACKLLIQELQSMN
Sbjct: 228 AILNKDAMDDKVCGACGLLGYYNHKLKAGTCSSCKNGKQISNVKVPYACKLLIQELQSMN 287

Query: 125 IVPRLKLEE 133
           IVPRLKLE+
Sbjct: 288 IVPRLKLED 296


>Medtr4g124030.1 | DNA-directed RNA polymerase | HC |
            chr4:51171803-51193467 | 20130731
          Length = 1191

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 18/149 (12%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            +GP+YYQ+L+HMV DK   R  G  + + RQP +G+ R GG+R GEMERD L+A+GA+ L
Sbjct: 1032 IGPVYYQRLRHMVSDKYQVRSTGTVDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYL 1091

Query: 61   IFERLMLSSDPFEVQVCRSCGLLGYYNY------------------KLKIGVCPSCKNGD 102
            + +RL   SD     VC  CG +    +                    +   C +C+   
Sbjct: 1092 LHDRLHTCSDYHIADVCSICGSMLSTTFIEPQKRPVRDIPGIPVRRAPRKVTCHACQTSK 1151

Query: 103  QISNMKLPYACKLLIQELQSMNIVPRLKL 131
             +  + +PY  + L  EL +MNI   LKL
Sbjct: 1152 GMETVAMPYIFRYLAAELAAMNIKMTLKL 1180


>Medtr0002s0510.1 | DNA-directed RNA polymerase subunit beta | LC |
            scaffold0002:218431-229740 | 20130731
          Length = 3148

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            +G  Y  KL H V +K+H R  GP + + +QP  G+A+ GG R+GEME   L  +G + +
Sbjct: 1000 IGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRVGEMEVWALEGFGVAHI 1059

Query: 61   IFERLMLSSD 70
            + E L   SD
Sbjct: 1060 LQEILTYKSD 1069


>Medtr4g051130.1 | DNA-directed RNA polymerase subunit beta | HC |
            chr4:18155924-18149828 | 20130731
          Length = 1748

 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1    MGPIYYQKLKHMVLDKMHARGNGPRNSLHRQPTEGKARNGGLRIGEMERDCLIAYGASML 60
            +G  Y  KL H V DK+H R +G    + +QP +G+A+ GG R+GEME   L  +G + +
Sbjct: 929  IGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHI 988

Query: 61   IFERLMLSSDPFEV-QVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQE 119
            + E L   SD  +  Q      ++G        G  P   +         P + +LL++E
Sbjct: 989  LQEMLTYKSDHIKARQEVLGTTIIG--------GTIPKPVDA--------PESFRLLVRE 1032

Query: 120  LQSM 123
            L+S+
Sbjct: 1033 LRSL 1036