Miyakogusa Predicted Gene
- Lj3g3v0951100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0951100.1 Non Characterized Hit- tr|I3T584|I3T584_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.71,0,Mitochondrial termination factor repeats,Mitochodrial
transcription termination factor-related; seg,,CUFF.41840.1
(341 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g067230.1 | transcription termination factor family protei... 528 e-150
Medtr2g049780.1 | transcription termination factor family protei... 190 2e-48
Medtr0320s0040.1 | ARP2/3 complex ARPC3, 21 kDa subunit | LC | s... 186 2e-47
Medtr5g041630.1 | transcription termination factor family protei... 175 7e-44
Medtr7g081270.1 | transcription termination factor family protei... 120 1e-27
Medtr5g094610.1 | transcription termination factor family protei... 109 5e-24
Medtr2g034600.1 | transcription termination factor family protei... 99 6e-21
Medtr2g034600.2 | transcription termination factor family protei... 99 8e-21
Medtr2g034600.3 | transcription termination factor family protei... 99 8e-21
Medtr4g070060.1 | transcription termination factor family protei... 95 1e-19
Medtr6g003960.1 | transcription termination factor family protei... 92 9e-19
Medtr5g068860.1 | transcription termination factor family protei... 87 3e-17
Medtr4g084630.1 | transcription termination factor family protei... 77 3e-14
Medtr1g115415.1 | transcription termination factor family protei... 75 7e-14
Medtr3g092710.1 | plastid transcriptionally active 15 protein | ... 65 9e-11
Medtr8g005155.1 | transcription termination factor family protei... 55 1e-07
Medtr8g105560.1 | transcription termination factor family protei... 52 9e-07
Medtr2g061450.1 | transcription termination factor family protei... 50 3e-06
>Medtr2g067230.1 | transcription termination factor family protein |
HC | chr2:28121064-28123893 | 20130731
Length = 328
Score = 528 bits (1360), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/315 (81%), Positives = 285/315 (90%), Gaps = 11/315 (3%)
Query: 27 IPKSFTRLCKPFHSRVPTSIHFHCARPSFFVRATVIKWRCPKQTLPPKDTVFKEKVIPPN 86
IPKSFTRLCKPFHSRVPTSI FH +RP+FFVRATV+KWRCP QTLPP +
Sbjct: 17 IPKSFTRLCKPFHSRVPTSISFHSSRPTFFVRATVVKWRCPNQTLPPN-----------S 65
Query: 87 DTGFEEKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMC 146
DTGF++KVLYLESIGIDSFSLIENHP L+TASL DIKSTV+YIT MDFS+IEF+R+VGMC
Sbjct: 66 DTGFQKKVLYLESIGIDSFSLIENHPKLVTASLDDIKSTVKYITGMDFSSIEFRRLVGMC 125
Query: 147 PEILTTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGI 206
PEILTTKVSDIIPVFTFLHREV V GS+IK VINRRPRLI+C+V+ +LRPT+YFLQSIGI
Sbjct: 126 PEILTTKVSDIIPVFTFLHREVRVIGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGI 185
Query: 207 EEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNY 266
EEV+KHT LLSCSVEDKF+PRI+YF+NIGFSR D TSMFRRFPQLFC SIKNNLEPKYNY
Sbjct: 186 EEVNKHTHLLSCSVEDKFIPRIEYFKNIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKYNY 245
Query: 267 FVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRLDL 326
FVVEMGRDLKE+KEFP YFSFSLENRIKPRHK+CVE+GVCF LP+LLKTSEVTF+NRL+
Sbjct: 246 FVVEMGRDLKEVKEFPHYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVTFQNRLEA 305
Query: 327 CVNSSTPLETSPLWC 341
VNSSTPL+TSPLWC
Sbjct: 306 FVNSSTPLKTSPLWC 320
>Medtr2g049780.1 | transcription termination factor family protein |
HC | chr2:22364848-22363786 | 20130731
Length = 313
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 152/237 (64%), Gaps = 5/237 (2%)
Query: 90 FEEKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMCPEI 149
F+EK+L LE +GIDS + +P L TA+L I S + ++ S + RI GMCP+I
Sbjct: 69 FKEKILCLEVMGIDSGKALSQNPNLHTATLESIHSIITFLVSKGIQHKDLPRIFGMCPKI 128
Query: 150 LTTKV-SDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIE- 207
LT+ + +D+ PVF FL ++ V ++VI + PRL+ SV ++L+P L++L +G+
Sbjct: 129 LTSSIKTDLNPVFDFLIHDLKVPDHSFRKVIKKCPRLLTSSVVDQLKPALFYLNRLGLRD 188
Query: 208 -EVSKHTD--LLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKY 264
E + D LL +VE +P++ + E++GF++++A M R P L SI+NN +PK+
Sbjct: 189 LEALAYQDCVLLVSNVERTIIPKLKHLESLGFTKEEARCMVLRCPALLTFSIENNFQPKF 248
Query: 265 NYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFR 321
YF VEM L+ELKEFPQYFSFSLENRIK RH + VE G+ L ++LK+++ FR
Sbjct: 249 EYFSVEMKGKLEELKEFPQYFSFSLENRIKVRHMEVVESGINLPLSLMLKSTDDEFR 305
>Medtr0320s0040.1 | ARP2/3 complex ARPC3, 21 kDa subunit | LC |
scaffold0320:12511-20285 | 20130731
Length = 225
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/130 (70%), Positives = 103/130 (79%), Gaps = 11/130 (8%)
Query: 49 HCARPSFFVRATVIKWRCPKQTLPPKDTVFKEKVIPPNDTGFEEKVLYLESIGIDSFSLI 108
HC++ + V+KWRCP QTLPP +DTGF++KVLYLESIGIDSFSLI
Sbjct: 18 HCSKTLLVILGKVVKWRCPNQTLPPN-----------SDTGFQKKVLYLESIGIDSFSLI 66
Query: 109 ENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMCPEILTTKVSDIIPVFTFLHREV 168
ENHP L+TASL DIKSTV+YIT MDFS IEF+R+VGMCPEILTTKVSDIIPVFTFLHREV
Sbjct: 67 ENHPKLVTASLDDIKSTVKYITGMDFSTIEFRRLVGMCPEILTTKVSDIIPVFTFLHREV 126
Query: 169 HVKGSDIKRV 178
V GS+IK V
Sbjct: 127 RVNGSNIKHV 136
>Medtr5g041630.1 | transcription termination factor family protein |
HC | chr5:18278077-18276642 | 20130731
Length = 308
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 143/244 (58%), Gaps = 9/244 (3%)
Query: 90 FEEKVLYLESIGIDSFSLIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMCPEI 149
F EKVLYLE + ++ + +P L + L +KS + ++S+ + RI+ M PE+
Sbjct: 57 FREKVLYLEKLKVNPEKAFKQNPNLRSCPLRTLKSVEQCLSSIGIHRSQMGRILDMLPEL 116
Query: 150 LTTK-VSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEE 208
LT + SDI P+ FL EV + D+ + I R PRL+V SV NRLRP L FL+ +G
Sbjct: 117 LTCEPYSDIYPLLDFLLNEVEIPYHDVHKSILRCPRLLVSSVENRLRPALCFLRELGF-- 174
Query: 209 VSKH------TDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEP 262
V H T LL SVED LP++++ +GF+R + ++M R P L S+ NL P
Sbjct: 175 VGPHSLTCQTTLLLVSSVEDTLLPKVEFLMGLGFTRVEVSNMVVRSPGLLTFSVDKNLAP 234
Query: 263 KYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRN 322
K+ +F+ EM D+ ELK FPQYFSFSLE RIKPRH V LG+ +L +L+ S+
Sbjct: 235 KFEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHAMLVRLGLSLSLQEMLQISDGDLIR 294
Query: 323 RLDL 326
L+L
Sbjct: 295 LLEL 298
>Medtr7g081270.1 | transcription termination factor family protein |
HC | chr7:31009132-31008262 | 20130731
Length = 284
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 135/244 (55%), Gaps = 16/244 (6%)
Query: 88 TGFEEKVLYLESIGIDSFSLIEN---HPMLITASLADIKSTVEYITSMDFSAIEFQRIVG 144
T + E + YL+++ I + + N HP ++ I + + ++ S F+ + R+V
Sbjct: 41 TTYNENLHYLKALTIINPNTKPNNLPHP----DTINHILTIITFLKSHSFTEADIPRLVH 96
Query: 145 MCPEILTTKVS--DIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFL- 201
P + TT +S + PVFTFL ++ D +I R P L+ VN+ L+PTL+FL
Sbjct: 97 HSPHLFTTSISPTSLSPVFTFLASDLLASVEDSHGLILRCPNLLFTDVNHILKPTLHFLR 156
Query: 202 QSIGIEEVSKHTD----LLSCSVEDKFLPRIDYFENI-GFSRDDATSMFRRFPQLFCCSI 256
+ +G+ +++ T+ LL+ VE K R+ + E + GF+ ++A ++ R P + +
Sbjct: 157 EEVGVSNLNRPTNRNAHLLNTRVE-KMRMRVRFLEEVVGFTYEEARNVCARLPAILGYDV 215
Query: 257 KNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTS 316
+NNL PK+ Y V EM R+++ELK+FPQ+F FSL+ RI PRH E GV L +L
Sbjct: 216 ENNLWPKFVYLVKEMEREVEELKKFPQFFGFSLDKRIVPRHLHLKERGVRIPLNRMLMWG 275
Query: 317 EVTF 320
+ F
Sbjct: 276 DEKF 279
>Medtr5g094610.1 | transcription termination factor family protein |
HC | chr5:41344877-41348219 | 20130731
Length = 503
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 14/226 (6%)
Query: 91 EEKVLYLESIGI---DSFSLIENHPMLITASLAD-IKSTVEYITSMDFSAIEFQRIVGMC 146
+E++ YL S+G+ D ++ P ++ ++ + +K+ V ++ + + + +I+
Sbjct: 227 QERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIAST 286
Query: 147 PEILTTKV-SDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFL---- 201
P + + V + P +L EV +K D+ +VI P+++V ++ L FL
Sbjct: 287 PSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKEL 346
Query: 202 ----QSIGIEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIK 257
+SI ++ V+KH LL S++D LPRI++ +IG D + Q+ S++
Sbjct: 347 DAPKESI-VKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLE 405
Query: 258 NNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVEL 303
NL+PKY Y V E+ +++ L ++P Y S SL+ RI+PRHK V L
Sbjct: 406 ANLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSL 451
>Medtr2g034600.1 | transcription termination factor family protein |
HC | chr2:13233091-13236843 | 20130731
Length = 557
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 107 LIENHPMLITASLA-DIKSTVEYITSMDFSAIEFQRIVGMCPEILTTKVSDIIPVFTFLH 165
++ P L SL+ ++K T+++ S+ ++ +++ P +LT I FL
Sbjct: 328 ILTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQKINESLDFL- 386
Query: 166 REVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEEVSKHTDLLSC------S 219
RE V +I +++ R P ++ SV + LRPT + +S+G++ L +C S
Sbjct: 387 REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVD---VGLLLFNCPQNFGLS 443
Query: 220 VEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELK 279
+E P +F G++ ++ M +R+ L+ S+ NL PK++YF+ M EL
Sbjct: 444 IEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELV 502
Query: 280 EFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRL 324
+FPQ+F +SLE RIKPR+ + GV L +L S F L
Sbjct: 503 KFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 547
>Medtr2g034600.2 | transcription termination factor family protein |
HC | chr2:13233091-13236856 | 20130731
Length = 561
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 107 LIENHPMLITASLA-DIKSTVEYITSMDFSAIEFQRIVGMCPEILTTKVSDIIPVFTFLH 165
++ P L SL+ ++K T+++ S+ ++ +++ P +LT I FL
Sbjct: 332 ILTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQKINESLDFL- 390
Query: 166 REVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEEVSKHTDLLSC------S 219
RE V +I +++ R P ++ SV + LRPT + +S+G++ L +C S
Sbjct: 391 REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVD---VGLLLFNCPQNFGLS 447
Query: 220 VEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELK 279
+E P +F G++ ++ M +R+ L+ S+ NL PK++YF+ M EL
Sbjct: 448 IEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELV 506
Query: 280 EFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRL 324
+FPQ+F +SLE RIKPR+ + GV L +L S F L
Sbjct: 507 KFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 551
>Medtr2g034600.3 | transcription termination factor family protein |
HC | chr2:13233799-13236843 | 20130731
Length = 496
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 107 LIENHPMLITASLA-DIKSTVEYITSMDFSAIEFQRIVGMCPEILTTKVSDIIPVFTFLH 165
++ P L SL+ ++K T+++ S+ ++ +++ P +LT I FL
Sbjct: 267 ILTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQKINESLDFL- 325
Query: 166 REVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEEVSKHTDLLSC------S 219
RE V +I +++ R P ++ SV + LRPT + +S+G++ L +C S
Sbjct: 326 REFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVD---VGLLLFNCPQNFGLS 382
Query: 220 VEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELK 279
+E P +F G++ ++ M +R+ L+ S+ NL PK++YF+ M EL
Sbjct: 383 IEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENLMPKWDYFLT-MDYPKSELV 441
Query: 280 EFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRL 324
+FPQ+F +SLE RIKPR+ + GV L +L S F L
Sbjct: 442 KFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFEEIL 486
>Medtr4g070060.1 | transcription termination factor family protein |
HC | chr4:26370303-26365871 | 20130731
Length = 617
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 14/257 (5%)
Query: 93 KVLYLESIGIDS---FSLIENHPMLITASLAD-IKSTVEYITSMDFSAIEFQRIVGMCPE 148
KV YL+ G++S L+ P L+ S+ + K V+Y+ + +R++ + P
Sbjct: 348 KVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPM 407
Query: 149 ILTTKVS-DIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQS-IGI 206
+ + I+P F +++ V+ I +++ + P L+ S+ ++RP + FL + G+
Sbjct: 408 VFCVDLEMTIVPKVKFF-QDLGVRNDGIAKMLVKFPTLLTYSLYKKIRPVVIFLMTKAGV 466
Query: 207 EE------VSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNL 260
E ++ +LL CS+ K + Y+ ++G M FP L +I + L
Sbjct: 467 TEENIPKVIALGPELLGCSIVHKLEGNVKYYLSLGIRLQQLGEMIADFPMLLRYNI-DVL 525
Query: 261 EPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTF 320
PKY Y M R LK+ EFP++FS+SLE RI PRHK VE + L +L ++ F
Sbjct: 526 RPKYTYLRKTMVRTLKDAIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEF 585
Query: 321 RNRLDLCVNSSTPLETS 337
N + + L+++
Sbjct: 586 NNMVKNMIRKRHKLQST 602
>Medtr6g003960.1 | transcription termination factor family protein |
HC | chr6:35948-29152 | 20130731
Length = 609
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 7/197 (3%)
Query: 108 IENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMCPEILTTKVSDIIPVFTFLHRE 167
I+ P L+ S + +K V+ + + +++ P++L K D + V F
Sbjct: 370 IKRQPQLLGCSTSKLKLMVDQFAELGVQRKKLYQVITRSPQLLLQKPEDFLQVVMFFE-N 428
Query: 168 VHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEE------VSKHTDLLSCSVE 221
+ +I R++ R P + S++ L+ + FL I + + + K+ +LL +
Sbjct: 429 MGFDKENIGRILARCPEIFATSISKTLQSKIEFLSRIEVSKAYIPLVIRKYPELLVSDIN 488
Query: 222 DKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEF 281
RI YF +G S + M R+F L SIK L PK + V M R ++++ +
Sbjct: 489 KTLPQRIVYFMKVGLSEKEIALMVRKFSPLLGYSIKEVLMPKLEFLVNSMKRPVRDVVRY 548
Query: 282 PQYFSFSLENRIKPRHK 298
P+YFS+SLE +IKPR++
Sbjct: 549 PRYFSYSLEKKIKPRYR 565
>Medtr5g068860.1 | transcription termination factor family protein |
HC | chr5:29165945-29163659 | 20130731
Length = 530
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 124/289 (42%), Gaps = 47/289 (16%)
Query: 96 YLESIGI---DSFSLIENHPMLITASLADIKST-VEYITSMDFSAIEFQRIVGMCPEILT 151
YL+ + I D ++E +P ++ L ST V Y+ + E I+ PEIL
Sbjct: 213 YLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILG 272
Query: 152 TKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEE--- 208
+V +I F + + I R+I +P ++ ++ +++P + L+ + E
Sbjct: 273 MRVGRVIKPFVEYLESLGIPRLAIARLIETQPYILGFDLDEKVKPNVKSLEEFNVRETSL 332
Query: 209 ---VSKHTDLLSCSVEDKF------------------------------------LPRID 229
++++ D++ +E K L +D
Sbjct: 333 ASIIAQYPDIIGTDLEPKLADKRSVLNSVLDLDAEDFGLIIEKMPQVVSLSSTPMLKHVD 392
Query: 230 YFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSL 289
+ ++ GFS D M PQL +I + ++ ++YF EM R L++L EFP +F++ L
Sbjct: 393 FLKDCGFSVDQMRKMIVGCPQLLALNI-DIMKLSFDYFQSEMERPLEDLVEFPAFFTYGL 451
Query: 290 ENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNRLDLCVNSSTPLETSP 338
E+ IKPRH + G+ +L +L S+ F R+D +E P
Sbjct: 452 ESTIKPRHNMVTKKGLKCSLAWMLNCSDEKFEQRMDYDTIDMEEMEMEP 500
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 200 FLQSIG--IEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIK 257
FL S+G IE+++ + +L CSV+ +P +DY +G + T R +PQ+ S+
Sbjct: 145 FLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTITQFLRTYPQVLHASVV 204
Query: 258 NNLEPKYNYFVVEMGRDLKE------LKEFPQYFSFSLENRIKPRHKQCVELGV 305
+L P Y G D+K L+ +P+ F LE + + +GV
Sbjct: 205 VDLVPVVKYL---QGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGV 255
>Medtr4g084630.1 | transcription termination factor family protein |
HC | chr4:32962573-32960937 | 20130731
Length = 332
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 150 LTTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEEV 209
+ TK+++I+ FL K I +++ + P ++ SV+ RLRPT FL+SIG+ E
Sbjct: 145 IETKMTEIV---KFLASVGLDKNGMIGKIMVKDPYIMGYSVDKRLRPTSEFLKSIGLTEH 201
Query: 210 SKHT------DLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPK 263
+LS V+ + D+ +N GF + +P + S++N+LEP+
Sbjct: 202 DLQVLALNFPSILSRDVDKVLVHNYDFLKNCGFQGRQIVDLVVGYPPILIKSVRNSLEPR 261
Query: 264 YNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNR 323
+ V MGR++ E+ ++P +F L+ ++ RHK + + +L +L +E F +
Sbjct: 262 IKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLKKRNLNCSLSEMLDCNEKKFHLK 321
Query: 324 LDL 326
L
Sbjct: 322 FGL 324
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 104/227 (45%), Gaps = 29/227 (12%)
Query: 127 EYITSMDFSAIEFQRIVGMCPEILTTKVSD-IIPVFTFLHREVHVKGSDIKRVINRRPRL 185
+Y+ ++ + IV CP+IL +++ I+P+ L+ + K ++ I + P++
Sbjct: 46 DYLKTIGIQERKLPSIVSKCPKILVLGLNEKIVPMVECLN-TLATKPHEVASAIAKFPQI 104
Query: 186 IVCSVNNRLRPTLYFLQSIGIEEVSKHTD--------LLSCSVEDKFLPRIDYFENIGFS 237
+ CSV +L P L F Q++G+ E KH L+S S+E K + + ++G
Sbjct: 105 LSCSVEEKLCPLLAFFQTLGVPE--KHIGKILLLNPRLISYSIETKMTEIVKFLASVGLD 162
Query: 238 RDDATS-MFRRFPQLFCCSIKNNLEPKYNYFVVEMG---RDLKELK-EFPQYFSFSLENR 292
++ + + P + S+ L P + F+ +G DL+ L FP S ++
Sbjct: 163 KNGMIGKIMVKDPYIMGYSVDKRLRPT-SEFLKSIGLTEHDLQVLALNFPSILSRDVDKV 221
Query: 293 IKPRH----------KQCVELGVCFTLPVLLKTSEVTFRNRLDLCVN 329
+ + +Q V+L V + P+L+K+ + R+ V+
Sbjct: 222 LVHNYDFLKNCGFQGRQIVDLVVGYP-PILIKSVRNSLEPRIKFLVD 267
>Medtr1g115415.1 | transcription termination factor family protein |
HC | chr1:52109146-52107512 | 20130731
Length = 501
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 129/312 (41%), Gaps = 83/312 (26%)
Query: 96 YLESIGIDSFSL---IENHPMLITAS-LADIKSTVEYITSMDFSAIEFQRIVGMCPEILT 151
YLE IGI L I+N+P ++ AS + ++ ++++ +D + ++ PE+L
Sbjct: 145 YLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLG 204
Query: 152 TKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGI----- 206
K+ + + V DI ++ + P + V ++P + +L ++G+
Sbjct: 205 FKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKRIL 264
Query: 207 ----------------EEVSKHTD-LLSCSVEDKFLPRI-------------------DY 230
E V + D L+S + ++LP + Y
Sbjct: 265 ARMLEKRAYLLGYDLEETVKPNVDCLISFGLRKEYLPSVIAQYPLIIGLPLKAKLSSQQY 324
Query: 231 FENI-------GFSR------------------------------DDATSMFRRFPQLFC 253
F ++ GF+R D SM + PQL
Sbjct: 325 FFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVA 384
Query: 254 CSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLL 313
++ ++ Y +F EMGR +KEL EFP+YF++SLE+RIKPR+++ G+ +L +L
Sbjct: 385 LRVEL-MKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKTKGIKCSLNWML 443
Query: 314 KTSEVTFRNRLD 325
S+ F RL
Sbjct: 444 NCSDQRFEERLQ 455
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 194 LRPTLYFLQSIG--IEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQL 251
+R + F+Q +G I++++++ +L CSV +P + Y E IG SR + +PQ+
Sbjct: 107 MRERVEFIQKLGLTIDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQV 166
Query: 252 FCCSIKNNLEPKYNYFVVEMGRDLKE------LKEFPQYFSFSLENRIKPRHKQCVELGV 305
S+ L P + G D+++ L+++P+ F LE + V +GV
Sbjct: 167 LHASVIVELAPVIKFL---RGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGV 223
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 179 INRRPRLIVCSVNNRLRPTLYFLQSIGI------EEVSKHTDLLSCSVEDKFLPRIDYFE 232
IN+ P ++ CSV + P L +L+ IGI E + + +L SV + P I +
Sbjct: 124 INQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLR 183
Query: 233 NIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMG---RDLKEL-KEFPQYFSFS 288
+ +DD + +++P+L ++ + Y +V +G RD+ + ++P +
Sbjct: 184 GLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAY-LVSIGVNPRDIGPMVTQYPYFLGMR 242
Query: 289 LENRIKPRHKQCVELGV 305
+ IKP V LG+
Sbjct: 243 VGTMIKPLVDYLVNLGL 259
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 92 EKVLYLESIGIDSFSLIENHPMLITASL-ADIKSTVEYITSMDFSAIEFQRIVGMCPEIL 150
E+V +++ +G+ + I +P+++ S+ ++ + Y+ + S + + P++L
Sbjct: 109 ERVEFIQKLGL-TIDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVL 167
Query: 151 -TTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIE-- 207
+ + ++ PV FL R + V+ DI V+ + P L+ + + ++ +L SIG+
Sbjct: 168 HASVIVELAPVIKFL-RGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPR 226
Query: 208 ----EVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEP 262
V+++ L V P +DY N+G + M + L ++ ++P
Sbjct: 227 DIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKRILARMLEKRAYLLGYDLEETVKP 285
>Medtr3g092710.1 | plastid transcriptionally active 15 protein | HC
| chr3:42360298-42362077 | 20130731
Length = 506
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 19/236 (8%)
Query: 98 ESIGIDSFSLIENHPMLITASLADIKSTVEYITSM-DFSAIEFQRIVGMCPEILTT-KVS 155
+SIG ++ P+++ S+ ++ ++++ D + +IV + P I T+ +
Sbjct: 268 DSIG----KVLNRFPIILNYSVEHLEEHIKFLRCFADLDDQQIFKIVLVFPAIFTSSRER 323
Query: 156 DIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEEVSKHTDL 215
+ P FL +E + +I +++ + + S + L L L IG + +K +
Sbjct: 324 KLRPRIQFL-KECGLDADEIFKLLTKAALFLSISFRSNLAYKLGVLVKIGYKYRTKELAV 382
Query: 216 -------LSCSVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFV 268
+SC K + F N GFS +D +M ++ PQ+ +LE K +Y +
Sbjct: 383 AIAASTRISCENMQKM---VSLFLNYGFSLEDIFAMSKKHPQILQYH-HASLEKKMDYMI 438
Query: 269 VEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVEL-GVCFTLPVLLKTSEVTFRNR 323
EM RD++EL +FP Y + L++RIK R++ +L G ++ LL S F +
Sbjct: 439 EEMNRDIQELLDFPAYLGYKLDDRIKHRYEIKKDLRGEQMSINKLLTVSSENFTGK 494
>Medtr8g005155.1 | transcription termination factor family protein |
HC | chr8:75123-77422 | 20130731
Length = 564
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 198 LYFLQSIGIEEVSKHTDLLSC--SVEDKFLPRIDYFENIGFSRDDATSMFRRFPQLFCCS 255
L F+ +IG E + D+L+ ++ R D ++G + + P++ +
Sbjct: 408 LNFMHTIGFGENAMTMDILTHMHGTSEELHKRFDCLLHLGIEFSKLCKIITKLPKILSQN 467
Query: 256 IKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPR---HKQCVELGVC---FTL 309
LE K N+ +MG L+ L FP + SF LENRIKPR H +E G+ +++
Sbjct: 468 -PETLEKKINFLCQDMGHSLELLDTFPAFISFDLENRIKPRFRFHMWALEKGLYSKNYSI 526
Query: 310 PVLLKTSEVTFRNRL 324
L+ TS+ F R+
Sbjct: 527 ASLVATSDKGFVGRV 541
>Medtr8g105560.1 | transcription termination factor family protein |
HC | chr8:44520352-44517998 | 20130731
Length = 560
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 30/241 (12%)
Query: 92 EKVLYLESIGIDS---FSLIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGM--- 145
++ Y + IDS ++E P +++ I VE++ AI Q + M
Sbjct: 269 QQYFYSLKLKIDSEGFAKVVEKMPQVVSLHQNVIMKPVEFLLG---RAIPLQDVASMVIK 325
Query: 146 CPEILTTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPRLIVCSVNNRLR-PTLYFLQSI 204
CP+++ +V + + F RE+ G +K + ++ + CS+N L F + +
Sbjct: 326 CPQLIALRVELMKNNYYFFKREM---GRPVKELKSKGRK---CSLNWMLNCSGQRFEERL 379
Query: 205 GIEEVSKHTDLLSCSVEDKF-LPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPK 263
+ + S + K LP D N DD ++RR +KN+
Sbjct: 380 QGNYIKTESICPSFCIGGKLKLPGNDIVLNEEEESDDEM-LYRR------TLMKNS---- 428
Query: 264 YNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELGVCFTLPVLLKTSEVTFRNR 323
Y +F E+GR +KEL EFP+YF++SLE+RIK + + G+ +L +L S+ F R
Sbjct: 429 YYFFKSEIGRPVKELVEFPEYFTYSLESRIKTKGLRSK--GMKCSLNWMLSCSDQRFEER 486
Query: 324 L 324
L
Sbjct: 487 L 487
>Medtr2g061450.1 | transcription termination factor family protein |
HC | chr2:26047796-26046155 | 20130731
Length = 432
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 14/226 (6%)
Query: 107 LIENHPMLITASLADIKSTVEYITSMDFSAIEFQRIVGMCPEILTTKVSDIIPVFTFLHR 166
++E P + I + ++ E R+V + P++L + D + R
Sbjct: 154 VLEEFPSAVVMGETQIVGVINFLMEFRVPKDEIDRVVRLFPKVLGFSIEDRLKPLIHELR 213
Query: 167 EVHVKGSDIKRVINRRPRLIVCSVNNRLRPTLYFLQSIGIEEVSKH----TDLLSCSVED 222
+ +++ + R PR++ + R L LQS+ E K L+ E
Sbjct: 214 GLGFSSREVRAEVVRDPRILGMEIGEFSR-CLKLLQSLKCREAIKERIFGEGLVRACFEV 272
Query: 223 KFLPRIDYFENIGFSRDDATSMFRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEFP 282
K R+D G R DA + + P+L ++ ++E K + + M + L E P
Sbjct: 273 KL--RVDCLCGRGLIRRDALKVLWKEPRLIAYDLE-DIEKKIEFLIQRMKYGVDCLHEVP 329
Query: 283 QYFSFSLENRIKPRH------KQCVELGVCFTLPVLLKTSEVTFRN 322
+Y + E +I PR+ K +G L ++K + + F N
Sbjct: 330 EYLGVNFEKQIVPRYNVIEYLKGKGAIGFEVGLKDIIKPTRLRFYN 375