Miyakogusa Predicted Gene

Lj3g3v0950810.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950810.1 Non Characterized Hit- tr|I1MJB8|I1MJB8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.21855 PE,79.37,0,no
description,NULL; rRNA_methylase,Putative rRNA methylase; seg,NULL;
S-adenosyl-L-methionine-depen,CUFF.41817.1
         (280 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060720.1 | rRNA methylase, putative | HC | chr1:26440306-...   327   1e-89

>Medtr1g060720.1 | rRNA methylase, putative | HC |
           chr1:26440306-26435575 | 20130731
          Length = 264

 Score =  327 bits (837), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/280 (64%), Positives = 193/280 (68%), Gaps = 16/280 (5%)

Query: 1   MLSLRFWFSSFETHNXXXXXXXXXXXXTPXXXXXXXXXXXGCFSVNPIKQNGVXXXXXXX 60
           MLSL F FS F TH+            +P            CFSV PIKQN         
Sbjct: 1   MLSLSFRFSCF-THSSSSHRRLLFLLPSPTISQC-------CFSVKPIKQNN-------- 44

Query: 61  XXXXXXXXXXXXXXXXXGLEDAFVSYLFGKKRATDVAHMVWKQVVQKGDTVIDATCGNGF 120
                            GLED FVS+LFGKKRATDVAHMVWK VVQKGDTVIDATCGNGF
Sbjct: 45  GNNLQSSSSFSKGSPFSGLEDVFVSFLFGKKRATDVAHMVWKHVVQKGDTVIDATCGNGF 104

Query: 121 DTLAMLNLVADDSHNGYVYALDIQKDALNNTSLLLEESINADKKQLVKLFNTCHSKMEEI 180
           DTLA+LNLVAD+SHNGYVYALDIQKDAL+ TSLLLEES+++++KQ VKLFN CHSKMEE+
Sbjct: 105 DTLALLNLVADESHNGYVYALDIQKDALDKTSLLLEESLSSNEKQHVKLFNICHSKMEEV 164

Query: 181 VPRNALVRLVAFNLGYLPGSDKEIIXXXXXXXXXXXXXXXXXXXXGLISIVVYVGHPGGR 240
           V  NA VRLVAFNLGYLPG DKEII                    GLISIVVYVGHPGGR
Sbjct: 165 VQSNAFVRLVAFNLGYLPGGDKEIITRSETTLLALEAAKRILIPGGLISIVVYVGHPGGR 224

Query: 241 EELEAVETFAARLSVETWICCKLQMLNRPSAPIPIFLFRR 280
           EELE VETFAARLSVE WICCKLQMLNRP APIPIFLFRR
Sbjct: 225 EELEVVETFAARLSVENWICCKLQMLNRPCAPIPIFLFRR 264