Miyakogusa Predicted Gene

Lj3g3v0950580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950580.1 Non Characterized Hit- tr|G7JC10|G7JC10_MEDTR
Putative ribosome biogenesis GTPase RsgA OS=Medicago
t,88.01,0,seg,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Nucleic acid-binding
proteins,N,NODE_48441_length_1250_cov_77.383202.path1.1
         (374 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085550.1 | ribosome biogenesis GTPase RsgA, putative | HC...   649   0.0  
Medtr3g085580.1 | DUF258 family protein | HC | chr3:38679127-386...   156   2e-38

>Medtr3g085550.1 | ribosome biogenesis GTPase RsgA, putative | HC |
           chr3:38667014-38663222 | 20130731
          Length = 471

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/367 (85%), Positives = 329/367 (89%)

Query: 8   GGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQRNSEILDPPVANVDH 67
           GG ELLCVVRALLKKIKRRVMVGDKVLVGS+DWVDRR MIENVFQRNSE+LDPPVANVDH
Sbjct: 105 GGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMIENVFQRNSEMLDPPVANVDH 164

Query: 68  LLVLFSLQNPKPEPFTLTRFLVEAESTGIPLTLALNKIELVDNETVASWKARVRDWGYDP 127
           LLVLFSL  PK EPFTLTRFLVEAESTGIPLTLALNK ELVD ET+ SWKAR R WGY P
Sbjct: 165 LLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTELVDKETMDSWKARFRGWGYQP 224

Query: 128 ILCSVESVHNLDLLAFKLRDQTTVIVGPSGVGKSSLINALRTNPRVCETAEGENWFEPIL 187
           I CSVES HN+DLLAF+LRDQTTV+VGPSGVGKSSLINALR+NPR C+TA+GENWFEPIL
Sbjct: 225 IFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINALRSNPRTCDTADGENWFEPIL 284

Query: 188 GSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKVTKQSLAET 247
           GSKW++DQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL+KVTKQSLA+T
Sbjct: 285 GSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 344

Query: 248 FPEIRKMLSANESAKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFG 307
           FPEIRKMLS NES KCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFG
Sbjct: 345 FPEIRKMLSGNESTKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFG 404

Query: 308 TKRESDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSFLXXXXXXXXXXXXXXXPVLR 367
           TKRESDVRL+ G+MG QQAEPRL  KKHRRQSRK+ NQS L               P+L 
Sbjct: 405 TKRESDVRLRTGNMGSQQAEPRLVLKKHRRQSRKKTNQSILDDLDDDDNLLDEENDPLLN 464

Query: 368 ALRNENP 374
           ALRNENP
Sbjct: 465 ALRNENP 471


>Medtr3g085580.1 | DUF258 family protein | HC |
           chr3:38679127-38679900 | 20130731
          Length = 159

 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 105/188 (55%), Gaps = 54/188 (28%)

Query: 187 LGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKVTKQSLAE 246
           +GSKW++DQRVAEVSTRSGR KHTT HVS LPLSGGG LADTPGFNQPSL+KVTKQS+A+
Sbjct: 26  IGSKWYDDQRVAEVSTRSGRRKHTTHHVSPLPLSGGGSLADTPGFNQPSLLKVTKQSIAQ 85

Query: 247 TFPEIRKMLSANESAKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTF 306
           TFPE+        S  C+ N+C                                      
Sbjct: 86  TFPEV--------SISCT-NSC-------------------------------------- 98

Query: 307 GTKRESDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSFLXXXXXXXXXXXXXXXPVL 366
                   +L+ GDMG QQAEPRL  KKHRRQSRK+ NQS L               P+L
Sbjct: 99  -------NKLRTGDMGSQQAEPRLVLKKHRRQSRKKTNQSILDDLDDDDNLLDEENDPLL 151

Query: 367 RALRNENP 374
            ALRNENP
Sbjct: 152 NALRNENP 159