Miyakogusa Predicted Gene

Lj3g3v0950230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0950230.1 Non Characterized Hit- tr|C0HIA6|C0HIA6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,62.5,5e-16,SLT,Lytic
transglycosylase-like, catalytic; Lysozyme-like,Lysozyme-like domain;
no description,NULL,CUFF.41785.1
         (422 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g065540.1 | hypothetical protein | LC | chr2:27483266-2748...   115   1e-25

>Medtr2g065540.1 | hypothetical protein | LC |
          chr2:27483266-27483627 | 20130731
          Length = 108

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 61/85 (71%), Gaps = 2/85 (2%)

Query: 1  MAINFSYWDDCVDPEDLEAMWNVPEVRTEWLKAGEARCQKVHLSRDPDGQPYLTQTEMR- 59
          MA NFSYWDDCVDP+DLEAMWNVPEV  EWLK GE R +KVHLSRDPDGQPYLTQTEMR 
Sbjct: 1  MAANFSYWDDCVDPQDLEAMWNVPEVSAEWLKVGEERGRKVHLSRDPDGQPYLTQTEMRY 60

Query: 60 -AVSKIVIGRHFDSEIDPGMICAIA 83
            +  I     FD     G  C ++
Sbjct: 61 FEIHYICDWMIFDFSTGTGQYCRLS 85



 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 236 TYWDSRASPEDMEAMWNHPEIHKVWSKSKQKQG-KVRFTHDEKKRPYLSRV-----EIKA 289
           +YWD    P+D+EAMWN PE+   W K  +++G KV  + D   +PYL++      EI  
Sbjct: 6   SYWDDCVDPQDLEAMWNVPEVSAEWLKVGEERGRKVHLSRDPDGQPYLTQTEMRYFEIHY 65

Query: 290 VADIVLFKY 298
           + D ++F +
Sbjct: 66  ICDWMIFDF 74