Miyakogusa Predicted Gene

Lj3g3v0931330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0931330.1 tr|A9TLA7|A9TLA7_PHYPA DNA polymerase
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_60547
PE=,46.3,1e-18,Ribonuclease H-like,Ribonuclease H-like domain;
seg,NULL; DNA POLYMERASE ALPHA CATALYTIC SUBUNIT,NUL,CUFF.41631.1
         (448 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 | 2...   383   e-106

>Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 |
           20130731
          Length = 1526

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 278/435 (63%), Gaps = 43/435 (9%)

Query: 1   MADDDGS-RKRRPTRGPESTARSQALERLKARLGGGRRSDPAGPQIKLENPIYDTVPEDE 59
           MADDDGS RKRRPTRGP++TARSQALE L++R   G RS    PQI+LENPIYDT+PEDE
Sbjct: 1   MADDDGSSRKRRPTRGPDATARSQALELLRSRRSNGPRS-TTTPQIRLENPIYDTIPEDE 59

Query: 60  YNALVAKRREQAQDFIVXXXXXXXXXXXXXXXWSKAGYTLXXXXXXXXXXXKAEKPKRKK 119
           Y ALVA R E+                     WSK G++L           K ++ K K 
Sbjct: 60  YTALVASREEE--------------------DWSKTGFSLSSDEEFDGESEKPQRKKEKD 99

Query: 120 DPQIKRPXXXXXXXXXXXX--MIGAQRLSSMFTSSNFKKNRDEKASESIVDDVIAEFAPD 177
             QIKRP              M+G  R+SSMFTS+NFKK+RD+K  ESIVDDV+ EFAPD
Sbjct: 100 ASQIKRPSVSSSAAKLSAAAAMMGGSRVSSMFTSANFKKSRDDKVCESIVDDVLKEFAPD 159

Query: 178 ENDRLRRRKAQPNPSAYSPGESLRVKPC-TTNSIRASPVSGNFSIDG----GTAKPVRAN 232
           END++ RRK Q N S+      ++  P  +  S+  S  S NF+  G    G  + VR N
Sbjct: 160 ENDKISRRKVQSNSSSVVNDARIKAIPKPSAESVLGSFASENFTKIGNRGNGEVESVRVN 219

Query: 233 ES--NGSELGVELKFE-EAAELNGNSENVQAQPETMQIDDFPS-NEGLSEDKV--VKDIE 286
           +   NGS LG+  K E E  E  GN E        M ++D    NE L E+KV  VKD E
Sbjct: 220 KDRDNGSRLGLVEKSEVEVNESLGNCEG------GMVVEDNECGNEDLVEEKVAYVKDEE 273

Query: 287 MEEKPALKKEVFTLNAKISREE-DPTLSAATAGWQAAKRSTGGGGEINGAVSKDGLSAEF 345
           ME KP +KKE FTLNAK+S E  DP L  ATAGWQAA+   GGGGE+N A + +    EF
Sbjct: 274 MEVKPVVKKEGFTLNAKVSEEAVDPKL-CATAGWQAARSGGGGGGEVNVADTNNQQQTEF 332

Query: 346 NLEADGSLPFFILDAHEEYYGANMGTVYLFGKVKTGDLYQSCCVVVKNMQRCVYAIPSRP 405
           NLE +GSLPF+ILDA+EEYYGANMGT+YLFGKVKTG LYQSCCVVVKNMQRCVYAIPS P
Sbjct: 333 NLEPEGSLPFYILDAYEEYYGANMGTLYLFGKVKTGTLYQSCCVVVKNMQRCVYAIPSHP 392

Query: 406 LHYTDEIMNLEKDVQ 420
           LH T+E++ LEKDVQ
Sbjct: 393 LHSTNEMIQLEKDVQ 407